biostudies-literatureLu ZZhejiang Science and Technology Major Program on Agricultural New Variety BreedingNational Nonprofit Institute Research Grant of Chinese Academy of Forestry495-497https://www.ebi.ac.uk/biostudies/studies/S-EPMC8933019biostudies-literatureUnknown7(3)<i>Toona ciliata</i> var. <i>pubescens</i> is classified as <i>Toona</i> subgenus of Meliaceae family, which belongs to a large deciduous tree species. It is also a kind of precious timber tree species and has a certain medicinal value. Here, the first complete chloroplast genome (cpDNA) sequence of <i>T. ciliata</i> var. <i>pubescens</i> was determined using the Illumina sequencing platform. The cpDNA genome is 159,481 bp in length, containing a large single-copy region (LSC) of 87,176 bp and a small single-copy region (SSC) of 18,381 bp, which were separated by a pair of inverted repeats (IRs) regions of 26,962 bp. The genome contains 138 genes, including 90 protein-coding genes, eight ribosomal RNA genes, and 40 transfer RNA genes. The phylogenetic analysis based on 19 cpDNA genomes showed a close relationship with <i>Toona ciliate</i>.Mitochondrial DNA. Part B, ResourcesComplete chloroplast genome of <i>Toona ciliata</i> Roem. var. <i>pubescens</i> (Franch.) Hand.-Mazz (Meliaceae), 'Chinese mahogany'.PMC89330192021C02070-42021C02070-1CAFYBB2020SZ004Liu JFan YDong XLu ZHan XDai JLiu WfalseComplete chloroplast genome of <i>Toona ciliata</i> Roem. var. <i>pubescens</i> (Franch.) Hand.-Mazz (Meliaceae), 'Chinese mahogany'.<i>Toona ciliata</i> var. <i>pubescens</i> is classified as <i>Toona</i> subgenus of Meliaceae family, which belongs to a large deciduous tree species. It is also a kind of precious timber tree species and has a certain medicinal value. Here, the first complete chloroplast genome (cpDNA) sequence of <i>T. ciliata</i> var. <i>pubescens</i> was determined using the Illumina sequencing platform. The cpDNA genome is 159,481 bp in length, containing a large single-copy region (LSC) of 87,176 bp and a small single-copy region (SSC) of 18,381 bp, which were separated by a pair of inverted repeats (IRs) regions of 26,962 bp. The genome contains 138 genes, including 90 protein-coding genes, eight ribosomal RNA genes, and 40 transfer RNA genes. The phylogenetic analysis based on 19 cpDNA genomes showed a close relationship with <i>Toona ciliate</i>.2022-01-01T00:00:00Z20222025-04-05T11:03:20.445Z2025-04-05T11:03:20.445ZS-EPMC89330193531120810.1080/23802359.2022.2049987