{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["8(2)"],"submitter":["Huang Z"],"funding":["the National Science and Technology Infrastructure of China","Department of Science and Technology of Liaoning Province"],"pubmed_abstract":["Shewanella algae is widely distributed in marine and freshwater habitats, and has been proved to be an emerging marine zoonotic and human pathogen. However, the genomic characteristics and pathogenicity of Shewanella algae are unclear. Here, the whole-genome features of 55 S. algae strains isolated from different sources were described. Pan-genome analysis yielded 2863 (19.4 %) genes shared among all strains. Functional annotation of the core genome showed that the main functions are focused on basic lifestyle such as metabolism and energy production. Meanwhile, the phylogenetic tree of the single nucleotide polymorphisms (SNPs) of core genome divided the 55 strains into three clades, with the majority of strains from China falling into the first two clades. As for the accessory genome, 16"],"journal":["Microbial genomics"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC8942018"],"repository":["biostudies-literature"],"pubmed_title":["Genomic analysis reveals high intra-species diversity of Shewanella algae."],"pmcid":["PMC8942018"],"funding_grant_id":["NPRC-32","QL202005"],"pubmed_authors":["Fu S","Huang Z","Wei Q","Xiao Y","Wang D","Yu K"],"additional_accession":[]},"is_claimable":false,"name":"Genomic analysis reveals high intra-species diversity of Shewanella algae.","description":"Shewanella algae is widely distributed in marine and freshwater habitats, and has been proved to be an emerging marine zoonotic and human pathogen. However, the genomic characteristics and pathogenicity of Shewanella algae are unclear. Here, the whole-genome features of 55 S. algae strains isolated from different sources were described. Pan-genome analysis yielded 2863 (19.4 %) genes shared among all strains. Functional annotation of the core genome showed that the main functions are focused on basic lifestyle such as metabolism and energy production. Meanwhile, the phylogenetic tree of the single nucleotide polymorphisms (SNPs) of core genome divided the 55 strains into three clades, with the majority of strains from China falling into the first two clades. As for the accessory genome, 16","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 Feb","modification":"2025-04-19T22:12:22.897Z","creation":"2025-04-19T22:12:22.897Z"},"accession":"S-EPMC8942018","cross_references":{"pubmed":["35143386"],"doi":["10.1099/mgen.0.000786"]}}