{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["13"],"submitter":["Zhang Z"],"pubmed_abstract":["The species <i>Brassica rapa</i> includes several important vegetable crops. The draft reference genome of <i>B. rapa</i> ssp. <i>pekinensis</i> was completed in 2011, and it has since been updated twice. The pangenome with structural variations of 18 <i>B. rapa</i> accessions was published in 2021. Although extensive genomic analysis has been conducted on <i>B. rapa</i>, a comprehensive genome annotation including gene structure, alternative splicing (AS) events, and non-coding genes is still lacking. Therefore, we used the Pacific Biosciences (PacBio) single-molecular long-read technology to improve gene models and produced the annotated genome version 3.5. In total, we obtained 753,041 full-length non-chimeric (FLNC) reads and collapsed these into 92,810 non-redundant consensus isoforms"],"journal":["Frontiers in plant science"],"pagination":["841618"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC8968949"],"repository":["biostudies-literature"],"pubmed_title":["Improved Reference Genome Annotation of <i>Brassica rapa</i> by Pacific Biosciences RNA Sequencing."],"pmcid":["PMC8968949"],"pubmed_authors":["Xi X","Wu J","Li Y","Lin R","Guo J","Zhang Z","Liang J","Wang X","Cai X"],"additional_accession":[]},"is_claimable":false,"name":"Improved Reference Genome Annotation of <i>Brassica rapa</i> by Pacific Biosciences RNA Sequencing.","description":"The species <i>Brassica rapa</i> includes several important vegetable crops. The draft reference genome of <i>B. rapa</i> ssp. <i>pekinensis</i> was completed in 2011, and it has since been updated twice. The pangenome with structural variations of 18 <i>B. rapa</i> accessions was published in 2021. Although extensive genomic analysis has been conducted on <i>B. rapa</i>, a comprehensive genome annotation including gene structure, alternative splicing (AS) events, and non-coding genes is still lacking. Therefore, we used the Pacific Biosciences (PacBio) single-molecular long-read technology to improve gene models and produced the annotated genome version 3.5. In total, we obtained 753,041 full-length non-chimeric (FLNC) reads and collapsed these into 92,810 non-redundant consensus isoforms","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022","modification":"2026-04-08T17:47:04.893Z","creation":"2025-02-19T01:55:11.914Z"},"accession":"S-EPMC8968949","cross_references":{"pubmed":["35371168"],"doi":["10.3389/fpls.2022.841618"]}}