{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Scott BM"],"funding":["Lundbeck Foundation"],"pagination":["25"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC8977440"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["23(1)"],"pubmed_abstract":["<h4>Background</h4>The coronavirus nonstructural protein 5 (Nsp5) is a cysteine protease required for processing the viral polyprotein and is therefore crucial for viral replication. Nsp5 from several coronaviruses have also been found to cleave host proteins, disrupting molecular pathways involved in innate immunity. Nsp5 from the recently emerged SARS-CoV-2 virus interacts with and can cleave human proteins, which may be relevant to the pathogenesis of COVID-19. Based on the continuing global pandemic, and emerging understanding of coronavirus Nsp5-human protein interactions, we set out to predict what human proteins are cleaved by the coronavirus Nsp5 protease using a bioinformatics approach.<h4>Results</h4>Using a previously developed neural network trained on coronavirus Nsp5 cleavage"],"journal":["BMC genomic data"],"pubmed_title":["Predicted coronavirus Nsp5 protease cleavage sites in the human proteome."],"pmcid":["PMC8977440"],"funding_grant_id":["R324-2019-1670"],"pubmed_authors":["Scott BM","Tonner PD","Lacasse V","Blom NS","Blom DG"],"additional_accession":[]},"is_claimable":false,"name":"Predicted coronavirus Nsp5 protease cleavage sites in the human proteome.","description":"<h4>Background</h4>The coronavirus nonstructural protein 5 (Nsp5) is a cysteine protease required for processing the viral polyprotein and is therefore crucial for viral replication. Nsp5 from several coronaviruses have also been found to cleave host proteins, disrupting molecular pathways involved in innate immunity. Nsp5 from the recently emerged SARS-CoV-2 virus interacts with and can cleave human proteins, which may be relevant to the pathogenesis of COVID-19. Based on the continuing global pandemic, and emerging understanding of coronavirus Nsp5-human protein interactions, we set out to predict what human proteins are cleaved by the coronavirus Nsp5 protease using a bioinformatics approach.<h4>Results</h4>Using a previously developed neural network trained on coronavirus Nsp5 cleavage","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 Apr","modification":"2026-05-30T15:04:27.93Z","creation":"2025-04-04T23:03:43.543Z"},"accession":"S-EPMC8977440","cross_references":{"pubmed":["35379171"],"doi":["10.1186/s12863-022-01044-y"]}}