{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["88(7)"],"submitter":["Kizina J"],"pubmed_abstract":["The phylum \"<i>Candidatus</i> Omnitrophica\" (candidate division OP3) is ubiquitous in anaerobic habitats but is currently characterized only by draft genomes from metagenomes and single cells. We had visualized cells of the phylotype OP3 LiM in methanogenic cultures on limonene as small epibiotic cells. In this study, we enriched OP3 cells by double density gradient centrifugation and obtained the first closed genome of an apparently clonal OP3 cell population by applying metagenomics and PCR for gap closure. Filaments of acetoclastic <i>Methanosaeta</i>, the largest morphotype in the culture community, contained empty cells, cells devoid of rRNA or of both rRNA and DNA, and dead cells according to transmission electron microscopy (TEM), thin-section TEM, scanning electron microscopy (SEM)"],"journal":["Applied and environmental microbiology"],"pagination":["e0240721"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9004380"],"repository":["biostudies-literature"],"pubmed_title":["<i>Methanosaeta</i> and \"<i>Candidatus</i> Velamenicoccus archaeovorus\"."],"pmcid":["PMC9004380"],"pubmed_authors":["Littmann S","Lonsing A","Markert S","Probian C","Richter M","Harder J","Santarella-Mellwig R","Stuber K","Jordan SFA","Schweder T","Rhiel E","Kizina J","Kolovou A","Martens GA"],"additional_accession":[]},"is_claimable":false,"name":"<i>Methanosaeta</i> and \"<i>Candidatus</i> Velamenicoccus archaeovorus\".","description":"The phylum \"<i>Candidatus</i> Omnitrophica\" (candidate division OP3) is ubiquitous in anaerobic habitats but is currently characterized only by draft genomes from metagenomes and single cells. We had visualized cells of the phylotype OP3 LiM in methanogenic cultures on limonene as small epibiotic cells. In this study, we enriched OP3 cells by double density gradient centrifugation and obtained the first closed genome of an apparently clonal OP3 cell population by applying metagenomics and PCR for gap closure. Filaments of acetoclastic <i>Methanosaeta</i>, the largest morphotype in the culture community, contained empty cells, cells devoid of rRNA or of both rRNA and DNA, and dead cells according to transmission electron microscopy (TEM), thin-section TEM, scanning electron microscopy (SEM)","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 Apr","modification":"2026-06-12T09:52:28.377Z","creation":"2024-11-06T07:08:48.645Z"},"accession":"S-EPMC9004380","cross_references":{"pubmed":["35311510"],"doi":["10.1128/aem.02407-21"]}}