biostudies-literatureTran DMNational Foundation for Science and Technology Development108108https://www.ebi.ac.uk/biostudies/studies/S-EPMC9010621biostudies-literatureUnknown42Vietnam is the most prominent black pepper producer and exporter in the world. In 2020, the cultivated area of black pepper in Vietnam was 132.000 hectares and its production was 270.000 tons, in which the Central Highlands region took about 70% of both the cultivated area and production [1]. Hence, this region is thought to be the capital of black pepper cultivation and production in Vietnam. Numerous researches have investigated biodiversity and collected various beneficial endophytic bacteria from this plant in this region; however, traditional methods only were used to isolate such bacteria [2], [3], [4], [5]. Therefore, these studies have a limitation to providing insight into the profiles of the endophytic microorganism dataset in the black pepper plant. Most recently, our work basedData in briefAnalysis of endophytic microbiome dataset from roots of black pepper (<i>Piper nigrum</i> L.) cultivated in the Central Highlands region, Vietnam using 16S rRNA gene metagenomic next-generation sequencing.PMC9010621106.04-2019.337Do TOTran DMNguyen ADNguyen THNguyen QVHuynh TUfalseAnalysis of endophytic microbiome dataset from roots of black pepper (<i>Piper nigrum</i> L.) cultivated in the Central Highlands region, Vietnam using 16S rRNA gene metagenomic next-generation sequencing.Vietnam is the most prominent black pepper producer and exporter in the world. In 2020, the cultivated area of black pepper in Vietnam was 132.000 hectares and its production was 270.000 tons, in which the Central Highlands region took about 70% of both the cultivated area and production [1]. Hence, this region is thought to be the capital of black pepper cultivation and production in Vietnam. Numerous researches have investigated biodiversity and collected various beneficial endophytic bacteria from this plant in this region; however, traditional methods only were used to isolate such bacteria [2], [3], [4], [5]. Therefore, these studies have a limitation to providing insight into the profiles of the endophytic microorganism dataset in the black pepper plant. Most recently, our work based2022-01-01T00:00:00Z2022 Jun2025-04-04T19:31:35.059Z2025-02-19T02:57:22.553ZS-EPMC90106213543423010.1016/j.dib.2022.108108