{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Sadamoto S"],"funding":["Japan Agency for Medical Research and Development","Japan Society for the Promotion of Science"],"pagination":["337"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9030445"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["8(4)"],"pubmed_abstract":["Invasive fungal infection (IFI) has a high mortality rate in patients who undergo hematopoietic stem cell transplantation, and it is often confirmed by postmortem dissection. When IFI is initially confirmed after an autopsy, the tissue culture and frozen section are challenging to secure, and in many cases, formalin-fixed, paraffin-embedded (FFPE) samples represent the only modality for identifying fungi. Histopathological diagnosis is a useful method in combination with molecular biological methods that can achieve more precise identification with reproducibility. Meanwhile, polymerase chain reaction (PCR) using fungal-specific primers helps identify fungi from FFPE tissues. Autopsy FFPE specimens have a disadvantage regarding the quality of DNA extracted compared with that of specimens o"],"journal":["Journal of fungi (Basel, Switzerland)"],"pubmed_title":["Comparison Approach for Identifying Missed Invasive Fungal Infections in Formalin-Fixed, Paraffin-Embedded Autopsy Specimens."],"pmcid":["PMC9030445"],"funding_grant_id":["JP21fk0108135h0302 and JP21fk0108094h0003.","JP21K16328"],"pubmed_authors":["Abe M","Tochigi N","Shibuya K","Sadamoto S","Murayama SY","Miyazaki Y","Nihonyanagi Y","Amemiya K","Shinozaki M","Mitsui Y","Umeyama T"],"additional_accession":[]},"is_claimable":false,"name":"Comparison Approach for Identifying Missed Invasive Fungal Infections in Formalin-Fixed, Paraffin-Embedded Autopsy Specimens.","description":"Invasive fungal infection (IFI) has a high mortality rate in patients who undergo hematopoietic stem cell transplantation, and it is often confirmed by postmortem dissection. When IFI is initially confirmed after an autopsy, the tissue culture and frozen section are challenging to secure, and in many cases, formalin-fixed, paraffin-embedded (FFPE) samples represent the only modality for identifying fungi. Histopathological diagnosis is a useful method in combination with molecular biological methods that can achieve more precise identification with reproducibility. Meanwhile, polymerase chain reaction (PCR) using fungal-specific primers helps identify fungi from FFPE tissues. Autopsy FFPE specimens have a disadvantage regarding the quality of DNA extracted compared with that of specimens o","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 Mar","modification":"2026-04-08T17:33:57.624Z","creation":"2025-04-03T22:51:52.111Z"},"accession":"S-EPMC9030445","cross_references":{"pubmed":["35448568"],"doi":["10.3390/jof8040337"]}}