{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Guo L"],"funding":["National Eye Institute of the National Institutes of Health","China Postdoctoral Foundation grant","NEI NIH HHS","Lotta M. Crabtree Fellowship","Burroughs Wellcome Fund","National Natural Science Foundation of China","Massachusetts Green High Performance Computing Center","USDA National Institute of Food and Agriculture","Natural Science Foundation"],"pagination":["1071-1083"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9048145"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["34(9)"],"pubmed_abstract":["Plants are continuously exposed to beneficial and pathogenic microbes, but how plants recognize and respond to friends versus foes remains poorly understood. Here, we compared the molecular response of <i>Arabidopsis thaliana</i> independently challenged with a <i>Fusarium oxysporum</i> endophyte Fo47 versus a pathogen Fo5176. These two <i>F. oxysporum</i> strains share a core genome of about 46 Mb, in addition to 1,229 and 5,415 unique accessory genes. Metatranscriptomic data reveal a shared pattern of expression for most plant genes (about 80%) in responding to both fungal inoculums at all timepoints from 12 to 96 h postinoculation (HPI). However, the distinct responding genes depict transcriptional plasticity, as the pathogenic interaction activates plant stress responses and suppresses"],"journal":["Molecular plant-microbe interactions : MPMI"],"pubmed_title":["Metatranscriptomic Comparison of Endophytic and Pathogenic <i>Fusarium</i>-Arabidopsis Interactions Reveals Plant Transcriptional Plasticity."],"pmcid":["PMC9048145"],"funding_grant_id":["31701739","2017 M623188","MASR-2009-04374","IOS-165241","MAS00532","MAS00496","R01 EY030150","R01EY030150","BWF-1014893"],"pubmed_authors":["Yang H","Steinberg C","Guo L","DeIulio GA","Ma LJ","Wang B","Zhang L","Vescio K","Berg A","Yu H","Edel-Hermann V","Kistler HC"],"additional_accession":[]},"is_claimable":false,"name":"Metatranscriptomic Comparison of Endophytic and Pathogenic <i>Fusarium</i>-Arabidopsis Interactions Reveals Plant Transcriptional Plasticity.","description":"Plants are continuously exposed to beneficial and pathogenic microbes, but how plants recognize and respond to friends versus foes remains poorly understood. Here, we compared the molecular response of <i>Arabidopsis thaliana</i> independently challenged with a <i>Fusarium oxysporum</i> endophyte Fo47 versus a pathogen Fo5176. These two <i>F. oxysporum</i> strains share a core genome of about 46 Mb, in addition to 1,229 and 5,415 unique accessory genes. Metatranscriptomic data reveal a shared pattern of expression for most plant genes (about 80%) in responding to both fungal inoculums at all timepoints from 12 to 96 h postinoculation (HPI). However, the distinct responding genes depict transcriptional plasticity, as the pathogenic interaction activates plant stress responses and suppresses","dates":{"release":"2021-01-01T00:00:00Z","publication":"2021 Sep","modification":"2026-05-31T14:00:20.392Z","creation":"2024-11-19T21:17:57.545Z"},"accession":"S-EPMC9048145","cross_references":{"pubmed":["33856230"],"doi":["10.1094/MPMI-03-21-0063-R"]}}