{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["12(5)"],"submitter":["Ryu T"],"funding":["Okinawa Institute of Science and Technology Graduate University"],"pubmed_abstract":["The false clownfish Amphiprion ocellaris is a popular fish species and an emerging model organism for studying the ecology, evolution, adaptation, and developmental biology of reef fishes. Despite this, high-quality genomic resources for this species are scarce, hindering advanced genomic analyses. Leveraging the power of PacBio long-read sequencing and Hi-C chromosome conformation capture techniques, we constructed a high-quality chromosome-scale genome assembly for the clownfish A. ocellaris. The initial genome assembly comprised of 1,551 contigs of 861.42 Mb, with an N50 of 863.85 kb. Hi-C scaffolding of the genome resulted in 24 chromosomes containing 856.61 Mb. The genome was annotated with 26,797 protein-coding genes and had 96.62% completeness of conserved actinopterygian genes, mak"],"journal":["G3 (Bethesda, Md.)"],"pagination":["jkac074"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9073690"],"repository":["biostudies-literature"],"pubmed_title":["A chromosome-scale genome assembly of the false clownfish, Amphiprion ocellaris."],"pmcid":["PMC9073690"],"pubmed_authors":["Ravasi T","Laudet V","Moore B","Izumiyama M","Kawai E","Herrera M","Ryu T"],"additional_accession":[]},"is_claimable":false,"name":"A chromosome-scale genome assembly of the false clownfish, Amphiprion ocellaris.","description":"The false clownfish Amphiprion ocellaris is a popular fish species and an emerging model organism for studying the ecology, evolution, adaptation, and developmental biology of reef fishes. Despite this, high-quality genomic resources for this species are scarce, hindering advanced genomic analyses. Leveraging the power of PacBio long-read sequencing and Hi-C chromosome conformation capture techniques, we constructed a high-quality chromosome-scale genome assembly for the clownfish A. ocellaris. The initial genome assembly comprised of 1,551 contigs of 861.42 Mb, with an N50 of 863.85 kb. Hi-C scaffolding of the genome resulted in 24 chromosomes containing 856.61 Mb. The genome was annotated with 26,797 protein-coding genes and had 96.62% completeness of conserved actinopterygian genes, mak","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 May","modification":"2026-05-31T05:05:46.27Z","creation":"2025-02-19T01:54:48.663Z"},"accession":"S-EPMC9073690","cross_references":{"pubmed":["35353192"],"doi":["10.1093/g3journal/jkac074"]}}