{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Baeza JA"],"funding":["Temasek Foundation under the Singapore Millennium Foundation Research Grant Programme"],"pagination":["903"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9140397"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["13(5)"],"pubmed_abstract":["The boring giant clam <i>Tridacna crocea</i> is an evolutionary, ecologically, economically, and culturally important reef-dwelling bivalve targeted by a profitable ornamental fishery in the Indo-Pacific Ocean. In this study, we developed genomic resources for <i>T. crocea</i>. Using low-pass (=low-coverage, ~6×) short read sequencing, this study, for the first time, estimated the genome size, unique genome content, and nuclear repetitive elements, including the 45S rRNA DNA operon, in <i>T. crocea</i>. Furthermore, we tested if the mitochondrial genome can be assembled from RNA sequencing data. The haploid genome size estimated using a k-mer strategy was 1.31-1.39 Gbp, which is well within the range reported before for other members of the family Cardiidae. Unique genome content estimates"],"journal":["Genes"],"pubmed_title":["Genomic Survey and Resources for the Boring Giant Clam <i>Tridacna crocea</i>."],"pmcid":["PMC9140397"],"funding_grant_id":["A-0003203-01-00"],"pubmed_authors":["Huang D","Neo ML","Baeza JA"],"additional_accession":[]},"is_claimable":false,"name":"Genomic Survey and Resources for the Boring Giant Clam <i>Tridacna crocea</i>.","description":"The boring giant clam <i>Tridacna crocea</i> is an evolutionary, ecologically, economically, and culturally important reef-dwelling bivalve targeted by a profitable ornamental fishery in the Indo-Pacific Ocean. In this study, we developed genomic resources for <i>T. crocea</i>. Using low-pass (=low-coverage, ~6×) short read sequencing, this study, for the first time, estimated the genome size, unique genome content, and nuclear repetitive elements, including the 45S rRNA DNA operon, in <i>T. crocea</i>. Furthermore, we tested if the mitochondrial genome can be assembled from RNA sequencing data. The haploid genome size estimated using a k-mer strategy was 1.31-1.39 Gbp, which is well within the range reported before for other members of the family Cardiidae. Unique genome content estimates","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 May","modification":"2026-04-08T10:13:26.324Z","creation":"2025-04-04T13:30:22.361Z"},"accession":"S-EPMC9140397","cross_references":{"pubmed":["35627288"],"doi":["10.3390/genes13050903"]}}