{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Zhao S"],"funding":["“13th Five-Year” Planning Issue of Jiangsu Open University [The City Vocational College of Jiangsu]","“14th Five-Year” Planning Issue of Jiangsu Open University [The City Vocational College of Jiangsu]","National Natural Science Foundation of China"],"pagination":["1466-1467"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9367649"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["7(8)"],"pubmed_abstract":["<i>Rubia yunnanensis</i> Diels 1912 (Rubiaceae) is a plant used in traditional Chinese medicine. We here assembled a complete chloroplast (cp) genome for <i>R. yunnanensis</i> using Illumina HiSeq reads. The genome is 155,108 bp in length. The genome contains 113 genes, including 79 protein coding genes, 30 tRNA genes, and four rRNA genes. The large single-copy (LSC) region is 84,848 bp, inverted repeat A (IRa) region is 26,573 bp, small single-copy (SSC) region is 17,114 bp, and inverted repeat B (IRb) region is 26,573 bp. A phylogenomic analysis found that <i>R. yunnanensis</i> is close to <i>R. cordifolia</i>. The assembled cp genome in this study provided a basis for the conservation and phylogenetic studies of <i>R. yunnanensis</i>."],"journal":["Mitochondrial DNA. Part B, Resources"],"pubmed_title":["A complete chloroplast genome of <i>Rubia yunnanensis</i> Diels (Rubiaceae), a traditional Chinese herb endemic to China."],"pmcid":["PMC9367649"],"funding_grant_id":["18SSW-ZR-Z-15","31500192","2021-D-01"],"pubmed_authors":["Zhao S","Liang H","Muchuku JK","Tang P"],"additional_accession":[]},"is_claimable":false,"name":"A complete chloroplast genome of <i>Rubia yunnanensis</i> Diels (Rubiaceae), a traditional Chinese herb endemic to China.","description":"<i>Rubia yunnanensis</i> Diels 1912 (Rubiaceae) is a plant used in traditional Chinese medicine. We here assembled a complete chloroplast (cp) genome for <i>R. yunnanensis</i> using Illumina HiSeq reads. The genome is 155,108 bp in length. The genome contains 113 genes, including 79 protein coding genes, 30 tRNA genes, and four rRNA genes. The large single-copy (LSC) region is 84,848 bp, inverted repeat A (IRa) region is 26,573 bp, small single-copy (SSC) region is 17,114 bp, and inverted repeat B (IRb) region is 26,573 bp. A phylogenomic analysis found that <i>R. yunnanensis</i> is close to <i>R. cordifolia</i>. The assembled cp genome in this study provided a basis for the conservation and phylogenetic studies of <i>R. yunnanensis</i>.","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022","modification":"2025-04-19T09:53:46.898Z","creation":"2025-04-19T09:53:46.898Z"},"accession":"S-EPMC9367649","cross_references":{"pubmed":["35965643"],"doi":["10.1080/23802359.2022.2107454"]}}