{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["10"],"submitter":["Shum CWY"],"funding":["Research Grants Council, University Grants Committee"],"pubmed_abstract":["Cnidarians including sea anemones, corals, hydra, and jellyfishes are a group of animals well known for their regeneration capacity. However, how non-coding RNAs such as microRNAs (also known as miRNAs) contribute to cnidarian tissue regeneration is poorly understood. Here, we sequenced and assembled the genome of the sea anemone <i>Exaiptasia pallida</i> collected in Hong Kong waters. The assembled genome size of <i>E. pallida</i> is 229.21 Mb with a scaffold N50 of 10.58 Mb and BUSCO completeness of 91.1%, representing a significantly improved genome assembly of this species. The organization of ANTP-class homeobox genes in this anthozoan further supported the previous findings in jellyfishes, where most of these genes are mainly located on three scaffolds. Tentacles of <i>E. pallida</i>"],"journal":["Frontiers in cell and developmental biology"],"pagination":["900321"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9444052"],"repository":["biostudies-literature"],"pubmed_title":["Genome of the sea anemone <i>Exaiptasia pallida</i> and transcriptome profiles during tentacle regeneration."],"pmcid":["PMC9444052"],"pubmed_authors":["Chan TF","Lau KF","Ngai SM","Xu F","Yip HY","Ang PO","Chu KH","Shum CWY","Li Y","Chan KM","Hui JHL","Swale T","Chui APY","Nong W","Qu Z","So WL"],"additional_accession":[]},"is_claimable":false,"name":"Genome of the sea anemone <i>Exaiptasia pallida</i> and transcriptome profiles during tentacle regeneration.","description":"Cnidarians including sea anemones, corals, hydra, and jellyfishes are a group of animals well known for their regeneration capacity. However, how non-coding RNAs such as microRNAs (also known as miRNAs) contribute to cnidarian tissue regeneration is poorly understood. Here, we sequenced and assembled the genome of the sea anemone <i>Exaiptasia pallida</i> collected in Hong Kong waters. The assembled genome size of <i>E. pallida</i> is 229.21 Mb with a scaffold N50 of 10.58 Mb and BUSCO completeness of 91.1%, representing a significantly improved genome assembly of this species. The organization of ANTP-class homeobox genes in this anthozoan further supported the previous findings in jellyfishes, where most of these genes are mainly located on three scaffolds. Tentacles of <i>E. pallida</i>","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022","modification":"2026-05-27T18:45:08.89Z","creation":"2024-11-13T11:08:14.423Z"},"accession":"S-EPMC9444052","cross_references":{"pubmed":["36072338"],"doi":["10.3389/fcell.2022.900321"]}}