{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["12"],"submitter":["Chen Z"],"pubmed_abstract":["<i>Phytophthora cinnamomi</i> causes crown and root wilting in more than 5,000 plant species and represents a significant threat to the health of natural ecosystems and horticultural crops. The early and accurate detection of <i>P. cinnamomi</i> is a fundamental step in disease prevention and appropriate management. In this study, based on public genomic sequence data and bioinformatic analysis of several <i>Phytophthora</i>, <i>Phytopythium</i>, and <i>Pythium</i> species, we have identified a new target gene, Pcinn13739; this allowed us to establish a recombinase polymerase amplification-lateral flow dipstick (RPA-LFD) assay for the detection of <i>P. cinnamomi</i>. <i>Pcinn13739</i>-RPA-LFD assay was highly specific to <i>P. cinnamomi</i>. Test results for 12 isolates of <i>P. cinnamomi"],"journal":["Frontiers in cellular and infection microbiology"],"pagination":["923700"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9452884"],"repository":["biostudies-literature"],"pubmed_title":["Rapid detection of <i>Phytophthora cinnamomi</i> based on a new target gene <i>Pcinn13739</i>."],"pmcid":["PMC9452884"],"pubmed_authors":["Jiao B","Chen Z","He H","Dai T","Zhou J"],"additional_accession":[]},"is_claimable":false,"name":"Rapid detection of <i>Phytophthora cinnamomi</i> based on a new target gene <i>Pcinn13739</i>.","description":"<i>Phytophthora cinnamomi</i> causes crown and root wilting in more than 5,000 plant species and represents a significant threat to the health of natural ecosystems and horticultural crops. The early and accurate detection of <i>P. cinnamomi</i> is a fundamental step in disease prevention and appropriate management. In this study, based on public genomic sequence data and bioinformatic analysis of several <i>Phytophthora</i>, <i>Phytopythium</i>, and <i>Pythium</i> species, we have identified a new target gene, Pcinn13739; this allowed us to establish a recombinase polymerase amplification-lateral flow dipstick (RPA-LFD) assay for the detection of <i>P. cinnamomi</i>. <i>Pcinn13739</i>-RPA-LFD assay was highly specific to <i>P. cinnamomi</i>. Test results for 12 isolates of <i>P. cinnamomi","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022","modification":"2025-04-26T13:48:10.619Z","creation":"2024-11-20T13:09:04.246Z"},"accession":"S-EPMC9452884","cross_references":{"pubmed":["36093190"],"doi":["10.3389/fcimb.2022.923700"]}}