{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["13"],"submitter":["Sun R"],"pubmed_abstract":["<i>Fragaria pentaphylla</i>, a wild diploid quinquefoliolate species of <i>Fragaria</i>, is native to Southwest China. It has two morphs of red and white fruit color in nature and has characteristics of unique fragrance and resistance, which made it not only a valuable breeding material but also a potential model plant for molecular function researches. Here, we generate a high-quality chromosome-level genome assembly of a <i>F. pentaphylla</i> accession, BAAFS-FP039 employing a combination of PacBio Long-Read Sequencing, Illumina Short-Read Sequencing, and Hi-C Sequencing. The assembled genome contained 256.74 Mb and a contig N50 length of 32.38 Mb, accounting for 99.9% of the estimated genome (256.77 Mb). Based on Hi-C data, seven pseudo-chromosomes of <i>F. pentaphylla</i>-FP039 genome "],"journal":["Frontiers in genetics"],"pagination":["873711"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9485601"],"repository":["biostudies-literature"],"pubmed_title":["Chromosome-level genome assembly of <i>Fragaria pentaphylla</i> using PacBio and Hi-C technologies."],"pmcid":["PMC9485601"],"pubmed_authors":["Chang L","Li S","Zhong C","Sun R","Zhang Y","Dong J","Zhang H","Gao Y","Wang G","Wei L","Sun J"],"additional_accession":[]},"is_claimable":false,"name":"Chromosome-level genome assembly of <i>Fragaria pentaphylla</i> using PacBio and Hi-C technologies.","description":"<i>Fragaria pentaphylla</i>, a wild diploid quinquefoliolate species of <i>Fragaria</i>, is native to Southwest China. It has two morphs of red and white fruit color in nature and has characteristics of unique fragrance and resistance, which made it not only a valuable breeding material but also a potential model plant for molecular function researches. Here, we generate a high-quality chromosome-level genome assembly of a <i>F. pentaphylla</i> accession, BAAFS-FP039 employing a combination of PacBio Long-Read Sequencing, Illumina Short-Read Sequencing, and Hi-C Sequencing. The assembled genome contained 256.74 Mb and a contig N50 length of 32.38 Mb, accounting for 99.9% of the estimated genome (256.77 Mb). Based on Hi-C data, seven pseudo-chromosomes of <i>F. pentaphylla</i>-FP039 genome ","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022","modification":"2025-04-18T15:47:47.42Z","creation":"2025-02-19T01:37:58.094Z"},"accession":"S-EPMC9485601","cross_references":{"pubmed":["36147512"],"doi":["10.3389/fgene.2022.873711"]}}