<HashMap><database>biostudies-literature</database><scores/><additional><submitter>Richie-Halford A</submitter><funding>NIMH NIH HHS</funding><funding>U.S. Department of Health &amp;amp; Human Services | NIH | National Institute of Mental Health</funding><funding>U.S. Department of Health &amp;amp; Human Services | NIH | National Institute of Biomedical Imaging and Bioengineering</funding><pagination>616</pagination><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/S-EPMC9556519</full_dataset_link><repository>biostudies-literature</repository><omics_type>Unknown</omics_type><volume>9(1)</volume><pubmed_abstract>We created a set of resources to enable research based on openly-available diffusion MRI (dMRI) data from the Healthy Brain Network (HBN) study. First, we curated the HBN dMRI data (N = 2747) into the Brain Imaging Data Structure and preprocessed it according to best-practices, including denoising and correcting for motion effects, susceptibility-related distortions, and eddy currents. Preprocessed, analysis-ready data was made openly available. Data quality plays a key role in the analysis of dMRI. To optimize QC and scale it to this large dataset, we trained a neural network through the combination of a small data subset scored by experts and a larger set scored by community scientists. The network performs QC highly concordant with that of experts on a held out set (ROC-AUC = 0.947). A </pubmed_abstract><journal>Scientific data</journal><pubmed_title>An analysis-ready and quality controlled resource for pediatric brain white-matter research.</pubmed_title><pmcid>PMC9556519</pmcid><funding_grant_id>R01MH120482</funding_grant_id><funding_grant_id>R01 MH120482</funding_grant_id><funding_grant_id>1R01EB027585-01</funding_grant_id><funding_grant_id>1RF1MH121868-01</funding_grant_id><pubmed_authors>Hogrogian GS</pubmed_authors><pubmed_authors>Sinclair S</pubmed_authors><pubmed_authors>Brynildsen JK</pubmed_authors><pubmed_authors>Caffarra S</pubmed_authors><pubmed_authors>Gonzalez-Escamilla G</pubmed_authors><pubmed_authors>Richie-Halford A</pubmed_authors><pubmed_authors>Sydnor VJ</pubmed_authors><pubmed_authors>Lydon-Staley DM</pubmed_authors><pubmed_authors>Crouse JJ</pubmed_authors><pubmed_authors>Sacchet MD</pubmed_authors><pubmed_authors>Ozarslan E</pubmed_authors><pubmed_authors>Cox DJ</pubmed_authors><pubmed_authors>Wiesman AI</pubmed_authors><pubmed_authors>Wiesman AG</pubmed_authors><pubmed_authors>Kohl SH</pubmed_authors><pubmed_authors>Castrellon JJ</pubmed_authors><pubmed_authors>Yuan R</pubmed_authors><pubmed_authors>Schneider JT</pubmed_authors><pubmed_authors>Korenic SA</pubmed_authors><pubmed_authors>Korponay C</pubmed_authors><pubmed_authors>Colenbier N</pubmed_authors><pubmed_authors>Calarco N</pubmed_authors><pubmed_authors>Peterson M</pubmed_authors><pubmed_authors>Lossin AJ</pubmed_authors><pubmed_authors>Madan CR</pubmed_authors><pubmed_authors>Kozlowski AK</pubmed_authors><pubmed_authors>Wiesman M</pubmed_authors><pubmed_authors>Shatalina E</pubmed_authors><pubmed_authors>Hahn Y</pubmed_authors><pubmed_authors>Tooley UA</pubmed_authors><pubmed_authors>Garrido-Vasquez P</pubmed_authors><pubmed_authors>Faskowitz J</pubmed_authors><pubmed_authors>Grotheer M</pubmed_authors><pubmed_authors>Pisanu C</pubmed_authors><pubmed_authors>Gruskin DC</pubmed_authors><pubmed_authors>Coffey EBJ</pubmed_authors><pubmed_authors>Zoner K</pubmed_authors><pubmed_authors>Fonville L</pubmed_authors><pubmed_authors>Grogans SE</pubmed_authors><pubmed_authors>Rokem A</pubmed_authors><pubmed_authors>Vieira BH</pubmed_authors><pubmed_authors>Deng ZD</pubmed_authors><pubmed_authors>Kraljevic N</pubmed_authors><pubmed_authors>Hanson JL</pubmed_authors><pubmed_authors>Parkes L</pubmed_authors><pubmed_authors>Sayed F</pubmed_authors><pubmed_authors>Karipidis II</pubmed_authors><pubmed_authors>Sims SA</pubmed_authors><pubmed_authors>Song JW</pubmed_authors><pubmed_authors>Roy E</pubmed_authors><pubmed_authors>Bourque J</pubmed_authors><pubmed_authors>Liberati G</pubmed_authors><pubmed_authors>Keller AS</pubmed_authors><pubmed_authors>Khera HS</pubmed_authors><pubmed_authors>Zhou D</pubmed_authors><pubmed_authors>O'Mara SM</pubmed_authors><pubmed_authors>Winters DE</pubmed_authors><pubmed_authors>Zajner C</pubmed_authors><pubmed_authors>Huque ZM</pubmed_authors><pubmed_authors>Frandsen SB</pubmed_authors><pubmed_authors>Kiar G</pubmed_authors><pubmed_authors>Newman BT</pubmed_authors><pubmed_authors>Yeatman JD</pubmed_authors><pubmed_authors>Rich RR</pubmed_authors><pubmed_authors>Ai L</pubmed_authors><pubmed_authors>Wall MB</pubmed_authors><pubmed_authors>Farmer H</pubmed_authors><pubmed_authors>Kirk PA</pubmed_authors><pubmed_authors>Shaffer LS</pubmed_authors><pubmed_authors>Welton T</pubmed_authors><pubmed_authors>Zimmerman B</pubmed_authors><pubmed_authors>Anderson JAE</pubmed_authors><pubmed_authors>Bleile M</pubmed_authors><pubmed_authors>Cieslak M</pubmed_authors><pubmed_authors>Abbott NJ</pubmed_authors><pubmed_authors>Ered A</pubmed_authors><pubmed_authors>Eklund A</pubmed_authors><pubmed_authors>Dugre JR</pubmed_authors><pubmed_authors>Guberman GI</pubmed_authors><pubmed_authors>Franco AR</pubmed_authors><pubmed_authors>Ojha A</pubmed_authors><pubmed_authors>Huang F</pubmed_authors><pubmed_authors>Leavitt MJ</pubmed_authors><pubmed_authors>Zakharov I</pubmed_authors><pubmed_authors>Kruper J</pubmed_authors><pubmed_authors>Chopra S</pubmed_authors><pubmed_authors>Avelar-Pereira B</pubmed_authors><pubmed_authors>Haggerty EB</pubmed_authors><pubmed_authors>Horien C</pubmed_authors><pubmed_authors>Michael C</pubmed_authors><pubmed_authors>Finch JE</pubmed_authors><pubmed_authors>Gagana B</pubmed_authors><pubmed_authors>Flounders MW</pubmed_authors><pubmed_authors>Zammarchi G</pubmed_authors><pubmed_authors>Marusak HA</pubmed_authors><pubmed_authors>Hobday H</pubmed_authors><pubmed_authors>Wang Y</pubmed_authors><pubmed_authors>Hall EH</pubmed_authors><pubmed_authors>Delap G</pubmed_authors><pubmed_authors>Harel Y</pubmed_authors><pubmed_authors>Zacharek SJ</pubmed_authors><pubmed_authors>Ellis K</pubmed_authors><pubmed_authors>Hettwer MD</pubmed_authors><pubmed_authors>Morand-Beaulieu S</pubmed_authors><pubmed_authors>Tamnes CK</pubmed_authors><pubmed_authors>Wegmann B</pubmed_authors><pubmed_authors>Bottom V</pubmed_authors><pubmed_authors>Chen B</pubmed_authors><pubmed_authors>Lorenc ES</pubmed_authors><pubmed_authors>Garic D</pubmed_authors><pubmed_authors>Valk SL</pubmed_authors><pubmed_authors>Magielse N</pubmed_authors><pubmed_authors>Bloomfield PS</pubmed_authors><pubmed_authors>Mayor J</pubmed_authors><pubmed_authors>Li Z</pubmed_authors><pubmed_authors>Lotter LD</pubmed_authors><pubmed_authors>Walther CK</pubmed_authors><pubmed_authors>Boyle R</pubmed_authors><pubmed_authors>James AR</pubmed_authors><pubmed_authors>Satterthwaite TD</pubmed_authors><pubmed_authors>Crippen JE</pubmed_authors><pubmed_authors>Lazari A</pubmed_authors><pubmed_authors>Milham M</pubmed_authors><pubmed_authors>McGowan AL</pubmed_authors><pubmed_authors>Pines AR</pubmed_authors><pubmed_authors>Turker HB</pubmed_authors><pubmed_authors>Meisler SL</pubmed_authors><pubmed_authors>Fibr Community Science Consortium</pubmed_authors><pubmed_authors>Kamhout SLH</pubmed_authors><pubmed_authors>Omary A</pubmed_authors><pubmed_authors>Leener B</pubmed_authors><pubmed_authors>Mitchell ME</pubmed_authors><pubmed_authors>Nielsen JA</pubmed_authors><pubmed_authors>Chaku N</pubmed_authors><pubmed_authors>Samara A</pubmed_authors><pubmed_authors>David S</pubmed_authors><pubmed_authors>Mehta KP</pubmed_authors><pubmed_authors>Covitz S</pubmed_authors><pubmed_authors>Flandin G</pubmed_authors><pubmed_authors>Kahhale I</pubmed_authors><pubmed_authors>Tripathi V</pubmed_authors><pubmed_authors>Sahoo AK</pubmed_authors></additional><is_claimable>false</is_claimable><name>An analysis-ready and quality controlled resource for pediatric brain white-matter research.</name><description>We created a set of resources to enable research based on openly-available diffusion MRI (dMRI) data from the Healthy Brain Network (HBN) study. First, we curated the HBN dMRI data (N = 2747) into the Brain Imaging Data Structure and preprocessed it according to best-practices, including denoising and correcting for motion effects, susceptibility-related distortions, and eddy currents. Preprocessed, analysis-ready data was made openly available. Data quality plays a key role in the analysis of dMRI. To optimize QC and scale it to this large dataset, we trained a neural network through the combination of a small data subset scored by experts and a larger set scored by community scientists. The network performs QC highly concordant with that of experts on a held out set (ROC-AUC = 0.947). A </description><dates><release>2022-01-01T00:00:00Z</release><publication>2022 Oct</publication><modification>2025-04-26T09:45:13.631Z</modification><creation>2024-10-15T20:44:06.421Z</creation></dates><accession>S-EPMC9556519</accession><cross_references><pubmed>36224186</pubmed><doi>10.1038/s41597-022-01695-7</doi></cross_references></HashMap>