{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Wu T"],"funding":["Key-Area Research and Development Program of Guangdong Province","the GDAS'Project of Science and Technology Development","Key-Area Research and Development Program of Guangdong  Program of Guangdong Province","the GDAS Project of Science and Technology Development"],"pagination":["1081"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9605614"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["8(10)"],"pubmed_abstract":["<i>Ganoderma lucidum</i> is an important medicinal mushroom widely cultured in Asian countries. Exopolysaccharides are bioactive compounds of <i>G. lucidum</i> with health benefits. Limited exopolysaccharide content hinders its extraction from <i>G. lucidum</i>. The addition of Tween80 had an enhanced effect on <i>G. lucidum</i> exopolysaccharide production in submerged fermentation. However, the mechanism of this effect remains unclear. In this study, we report on a high-quality assembly of <i>G. lucidum</i> strain yw-1-5 to lay the foundation for further transcriptome analysis. The genome sequence was 58.16 Mb and consisted of 58 scaffolds with an N50 of 4.78 Mb. A total of 13,957 protein-coding genes were annotated and Hi-C data mapped to 12 pseudo-chromosomes. Genes encoding glycosyltr"],"journal":["Journal of fungi (Basel, Switzerland)"],"pubmed_title":["Whole-Genome Sequencing and Transcriptome Analysis of <i>Ganoderma lucidum</i> Strain Yw-1-5 Provides New Insights into the Enhanced Effect of Tween80 on Exopolysaccharide Production."],"pmcid":["PMC9605614"],"funding_grant_id":["2020GDASYL-20200103022","2018B0202050010"],"pubmed_authors":["Xie Y","Cai M","Chen J","Wu Q","Jiao C","Liu Y","Li X","Zhang Z","Hu H","Wu T","Gao X","Chen S","Xiao C"],"additional_accession":[]},"is_claimable":false,"name":"Whole-Genome Sequencing and Transcriptome Analysis of <i>Ganoderma lucidum</i> Strain Yw-1-5 Provides New Insights into the Enhanced Effect of Tween80 on Exopolysaccharide Production.","description":"<i>Ganoderma lucidum</i> is an important medicinal mushroom widely cultured in Asian countries. Exopolysaccharides are bioactive compounds of <i>G. lucidum</i> with health benefits. Limited exopolysaccharide content hinders its extraction from <i>G. lucidum</i>. The addition of Tween80 had an enhanced effect on <i>G. lucidum</i> exopolysaccharide production in submerged fermentation. However, the mechanism of this effect remains unclear. In this study, we report on a high-quality assembly of <i>G. lucidum</i> strain yw-1-5 to lay the foundation for further transcriptome analysis. The genome sequence was 58.16 Mb and consisted of 58 scaffolds with an N50 of 4.78 Mb. A total of 13,957 protein-coding genes were annotated and Hi-C data mapped to 12 pseudo-chromosomes. Genes encoding glycosyltr","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 Oct","modification":"2026-04-08T11:43:31.936Z","creation":"2024-11-13T23:30:54.67Z"},"accession":"S-EPMC9605614","cross_references":{"pubmed":["36294646"],"doi":["10.3390/jof8101081"]}}