{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Tan Z"],"funding":["Hubei Hongshan Laboratory Fund","National Science Fund for Distinguished Young Scholars","Overseas Expertise Introduction Project for Discipline Innovation","National Natural Science Foundation of China","HZAU-AGIS Cooperation Fund"],"pagination":["233"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9639296"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["23(1)"],"pubmed_abstract":["<h4>Background</h4>Regulation of gene expression plays an essential role in controlling the phenotypes of plants. Brassica napus (B. napus) is an important source for the vegetable oil in the world, and the seed oil content is an important trait of B. napus.<h4>Results</h4>We perform a comprehensive analysis of the transcriptional variability in the seeds of B. napus at two developmental stages, 20 and 40 days after flowering (DAF). We detect 53,759 and 53,550 independent expression quantitative trait loci (eQTLs) for 79,605 and 76,713 expressed genes at 20 and 40 DAF, respectively. Among them, the local eQTLs are mapped to the adjacent genes more frequently. The adjacent gene pairs are regulated by local eQTLs with the same open chromatin state and show a stronger mode of expression piggy"],"journal":["Genome biology"],"pubmed_title":["Comprehensive transcriptional variability analysis reveals gene networks regulating seed oil content of Brassica napus."],"pmcid":["PMC9639296"],"funding_grant_id":["32225037","32200501","SZYJY2021004","B20051","2021HSZD004"],"pubmed_authors":["Peng Y","Xie W","Liu K","Snowdon RJ","Zong Z","Yao X","Xiong Y","Guo N","Liu Y","Golicz AA","Guo L","Tan Z","Zhang Y","Lu S","Lou H","Xia C","Tu Z","Liu D","Xiong F","Zhu T","Wu X","Ye J","Zhao H"],"additional_accession":[]},"is_claimable":false,"name":"Comprehensive transcriptional variability analysis reveals gene networks regulating seed oil content of Brassica napus.","description":"<h4>Background</h4>Regulation of gene expression plays an essential role in controlling the phenotypes of plants. Brassica napus (B. napus) is an important source for the vegetable oil in the world, and the seed oil content is an important trait of B. napus.<h4>Results</h4>We perform a comprehensive analysis of the transcriptional variability in the seeds of B. napus at two developmental stages, 20 and 40 days after flowering (DAF). We detect 53,759 and 53,550 independent expression quantitative trait loci (eQTLs) for 79,605 and 76,713 expressed genes at 20 and 40 DAF, respectively. Among them, the local eQTLs are mapped to the adjacent genes more frequently. The adjacent gene pairs are regulated by local eQTLs with the same open chromatin state and show a stronger mode of expression piggy","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 Nov","modification":"2025-06-01T03:23:19.725Z","creation":"2025-06-01T03:23:19.725Z"},"accession":"S-EPMC9639296","cross_references":{"pubmed":["36345039"],"doi":["10.1186/s13059-022-02801-z"]}}