{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["13"],"submitter":["Park J"],"pubmed_abstract":["Plant bacterial disease is a complex outcome achieved through a combination of virulence factors that are activated during infection. However, the common virulence factors across diverse plant pathogens are largely uncharacterized. Here, we established a pan-genome shared across the following plant pathogens: <i>Burkholderia glumae</i>, <i>Ralstonia solanacearum</i>, and <i>Xanthomonas oryzae</i> pv. <i>oryzae</i>. By overlaying <i>in planta</i> transcriptomes onto the pan-genome, we investigated the expression profiles of common genes during infection. We found over 70% of identical patterns for genes commonly expressed by the pathogens in different plant hosts or infection sites. Co-expression patterns revealed the activation of a signal transduction cascade to recognize and respond to e"],"journal":["Frontiers in plant science"],"pagination":["1030720"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9709210"],"repository":["biostudies-literature"],"pubmed_title":["Genome-guided comparative <i>in planta</i> transcriptome analyses for identifying cross-species common virulence factors in bacterial phytopathogens."],"pmcid":["PMC9709210"],"pubmed_authors":["Park J","Lee SY","Park DS","Jung H","Mannaa M","Lee SW","Han G","Lee HH","Seo YS","Kim N"],"additional_accession":[]},"is_claimable":false,"name":"Genome-guided comparative <i>in planta</i> transcriptome analyses for identifying cross-species common virulence factors in bacterial phytopathogens.","description":"Plant bacterial disease is a complex outcome achieved through a combination of virulence factors that are activated during infection. However, the common virulence factors across diverse plant pathogens are largely uncharacterized. Here, we established a pan-genome shared across the following plant pathogens: <i>Burkholderia glumae</i>, <i>Ralstonia solanacearum</i>, and <i>Xanthomonas oryzae</i> pv. <i>oryzae</i>. By overlaying <i>in planta</i> transcriptomes onto the pan-genome, we investigated the expression profiles of common genes during infection. We found over 70% of identical patterns for genes commonly expressed by the pathogens in different plant hosts or infection sites. Co-expression patterns revealed the activation of a signal transduction cascade to recognize and respond to e","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022","modification":"2026-05-29T18:52:36.72Z","creation":"2024-11-06T14:26:24.513Z"},"accession":"S-EPMC9709210","cross_references":{"pubmed":["36466249"],"doi":["10.3389/fpls.2022.1030720"]}}