{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["2(1)"],"submitter":["Gyori BM"],"pubmed_abstract":["<h4>Summary</h4>Gilda is a software tool and web service that implements a scored string matching algorithm for names and synonyms across entries in biomedical ontologies covering genes, proteins (and their families and complexes), small molecules, biological processes and diseases. Gilda integrates machine-learned disambiguation models to choose between ambiguous strings given relevant surrounding text as context, and supports species-prioritization in case of ambiguity.<h4>Availability and implementation</h4>The Gilda web service is available at http://grounding.indra.bio with source code, documentation and tutorials available via https://github.com/indralab/gilda.<h4>Supplementary information</h4>Supplementary data are available at <i>Bioinformatics Advances</i> online."],"journal":["Bioinformatics advances"],"pagination":["vbac034"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9710686"],"repository":["biostudies-literature"],"pubmed_title":["Gilda: biomedical entity text normalization with machine-learned disambiguation as a service."],"pmcid":["PMC9710686"],"pubmed_authors":["Gyori BM","Hoyt CT","Steppi A"],"additional_accession":[]},"is_claimable":false,"name":"Gilda: biomedical entity text normalization with machine-learned disambiguation as a service.","description":"<h4>Summary</h4>Gilda is a software tool and web service that implements a scored string matching algorithm for names and synonyms across entries in biomedical ontologies covering genes, proteins (and their families and complexes), small molecules, biological processes and diseases. Gilda integrates machine-learned disambiguation models to choose between ambiguous strings given relevant surrounding text as context, and supports species-prioritization in case of ambiguity.<h4>Availability and implementation</h4>The Gilda web service is available at http://grounding.indra.bio with source code, documentation and tutorials available via https://github.com/indralab/gilda.<h4>Supplementary information</h4>Supplementary data are available at <i>Bioinformatics Advances</i> online.","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022","modification":"2024-11-19T19:27:59.856Z","creation":"2024-11-19T19:27:59.856Z"},"accession":"S-EPMC9710686","cross_references":{"pubmed":["36699362"],"doi":["10.1093/bioadv/vbac034"]}}