{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Kamp EJ"],"funding":["Maag Lever Darm Stichting"],"pagination":["227-235"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9825993"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["258(3)"],"pubmed_abstract":["Carcinogenesis of primary sclerosing cholangitis (PSC)-associated cholangiocarcinoma (CCA) is largely unexplored. Improved understanding of the molecular events involved may guide development of novel avenues for rational clinical management. We aimed to assess the genetic alterations during progression of the neoplastic cascade from biliary dysplasia towards CCA in PSC. Forty-four resection specimens or biopsies of PSC patients with biliary dysplasia (n = 2) and/or CCA (n = 42) were included. DNA was extracted from sections of formalin-fixed paraffin-embedded tissue blocks with dysplasia (n = 23), CCA (n = 69), and nonneoplastic tissue (n = 28). A custom-made next-generation sequencing (NGS) panel of 28 genes was used for mutation and copy number variation (CNV) detection. In addition, CN"],"journal":["The Journal of pathology"],"pubmed_title":["Genetic alterations during the neoplastic cascade towards cholangiocarcinoma in primary sclerosing cholangitis."],"pmcid":["PMC9825993"],"funding_grant_id":["CDG 16‐13"],"pubmed_authors":["Kamp EJ","Trivedi PJ","Groot Koerkamp B","Peppelenbosch MP","van Marion R","Verheij J","Dinjens WN","Ponsioen CY","Bruno MJ","Doukas M","de Vries AC"],"additional_accession":[]},"is_claimable":false,"name":"Genetic alterations during the neoplastic cascade towards cholangiocarcinoma in primary sclerosing cholangitis.","description":"Carcinogenesis of primary sclerosing cholangitis (PSC)-associated cholangiocarcinoma (CCA) is largely unexplored. Improved understanding of the molecular events involved may guide development of novel avenues for rational clinical management. We aimed to assess the genetic alterations during progression of the neoplastic cascade from biliary dysplasia towards CCA in PSC. Forty-four resection specimens or biopsies of PSC patients with biliary dysplasia (n = 2) and/or CCA (n = 42) were included. DNA was extracted from sections of formalin-fixed paraffin-embedded tissue blocks with dysplasia (n = 23), CCA (n = 69), and nonneoplastic tissue (n = 28). A custom-made next-generation sequencing (NGS) panel of 28 genes was used for mutation and copy number variation (CNV) detection. In addition, CN","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 Nov","modification":"2025-04-05T10:27:26.312Z","creation":"2025-04-05T10:27:26.312Z"},"accession":"S-EPMC9825993","cross_references":{"pubmed":["35897137"],"doi":["10.1002/path.5994"]}}