{"database":"biostudies-literature","file_versions":[],"scores":null,"additional":{"submitter":["Scott ER"],"funding":["National Institutes of Health","NIGMS NIH HHS"],"pagination":["1557-1566"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC9875722"],"repository":["biostudies-literature"],"omics_type":["Unknown"],"volume":["43(11)"],"pubmed_abstract":["To determine the phase of NUDT15 sequence variants for more comprehensive star (*) allele diplotyping, we developed a novel long-read single-molecule real-time HiFi amplicon sequencing method. A 10.5 kb NUDT15 amplicon assay was validated using reference material positive controls and additional samples for specimen type and blinded accuracy assessment. Triplicate NUDT15 HiFi sequencing of two reference material samples had nonreference genotype concordances of >99.9%, indicating that the assay is robust. Notably, short-read genome sequencing of a subset of samples was unable to determine the phase of star (*) allele-defining NUDT15 variants, resulting in ambiguous diplotype results. In contrast, long-read HiFi sequencing phased all variants across the NUDT15 amplicons, including a *2/*9 d"],"journal":["Human mutation"],"pubmed_title":["Long-read HiFi sequencing of NUDT15: Phased full-gene haplotyping and pharmacogenomic allele discovery."],"pmcid":["PMC9875722"],"funding_grant_id":["R35 GM141947"],"pubmed_authors":["Scott ER","Botton MR","Nicoletti P","Scott SA","Seki Y","Hoshitsuki K","Cody N","Edelmann L","Schadt EE","Yang JJ","Moriyama T","Yang Y","Korlach J","Harting J","Baybayan P","Chakraborty S"],"additional_accession":[]},"is_claimable":false,"name":"Long-read HiFi sequencing of NUDT15: Phased full-gene haplotyping and pharmacogenomic allele discovery.","description":"To determine the phase of NUDT15 sequence variants for more comprehensive star (*) allele diplotyping, we developed a novel long-read single-molecule real-time HiFi amplicon sequencing method. A 10.5 kb NUDT15 amplicon assay was validated using reference material positive controls and additional samples for specimen type and blinded accuracy assessment. Triplicate NUDT15 HiFi sequencing of two reference material samples had nonreference genotype concordances of >99.9%, indicating that the assay is robust. Notably, short-read genome sequencing of a subset of samples was unable to determine the phase of star (*) allele-defining NUDT15 variants, resulting in ambiguous diplotype results. In contrast, long-read HiFi sequencing phased all variants across the NUDT15 amplicons, including a *2/*9 d","dates":{"release":"2022-01-01T00:00:00Z","publication":"2022 Nov","modification":"2026-04-08T15:37:10.937Z","creation":"2025-04-04T02:59:44.602Z"},"accession":"S-EPMC9875722","cross_references":{"pubmed":["36057977"],"doi":["10.1002/humu.24457"]}}