{"database":"biostudies-other","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["226"],"submitter":["Lucian Smith"],"journal":["Journal of theoretical biology"],"pagination":["33-43"],"species":["Homo sapiens"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/MODEL1006230091"],"repository":["biostudies-other"],"additional_accession":["14637052"],"pubmed_authors":["administrator","Lucian Smith","Camille Laibe"]},"is_claimable":false,"name":"Reed2004 - Methionine Cycle","description":"<notes xmlns=\"http://www.sbml.org/sbml/level2/version4\">      <body xmlns=\"http://www.w3.org/1999/xhtml\">        <div class=\"dc:title\">Reed2004 - Methionine Cycle</div><div class=\"dc:bibliographicCitation\">  <p>This model is described in the article:</p>  <div class=\"bibo:title\">    <a href=\"http://identifiers.org/pubmed/14637052\" title=\"Access to this publication\">A mathematical model of the    methionine cycle.</a>  </div>  <div class=\"bibo:authorList\">Reed MC, Nijhout HF, Sparks R,  Ulrich CM.</div>  <div class=\"bibo:Journal\">J. Theor. Biol. 2004 Jan; 226(1):  33-43</div>  <p>Abstract:</p>  <div class=\"bibo:abstract\">    <p>Building on the work of Martinov et al. (2000), a    mathematical model is developed for the methionine cycle. A    large amount of information is available about the enzymes that    catalyse individual reaction steps in the cycle, from    methionine to S-adenosylmethionine to S-adenosylhomocysteine to    homocysteine, and the removal of mass from the cycle by the    conversion of homocysteine to cystathionine. Nevertheless, the    behavior of the cycle is very complicated since many substrates    alter the activities of the enzymes in the reactions that    produce them, and some can also alter the activities of other    enzymes in the cycle. The model consists of four differential    equations, based on known reaction kinetics, that can be solved    to give the time course of the concentrations of the four main    substrates in the cycle under various circumstances. We show    that the behavior of the model in response to genetic    abnormalities and dietary deficiencies is similar to the    changes seen in a wide variety of experimental studies. We    conduct computational \"experiments\" that give understanding of    the regulatory behavior of the methionine cycle under normal    conditions and the behavior in the presence of genetic    variation and dietary deficiencies.</p>  </div></div><div class=\"dc:publisher\">  <p>This model is hosted on   <a href=\"http://www.ebi.ac.uk/biomodels/\">BioModels Database</a>  and identified by:   <a href=\"http://identifiers.org/biomodels.db/BIOMD0000000698\">BIOMD0000000698</a>.</p>  <p>To cite BioModels Database, please use:   <a href=\"http://identifiers.org/pubmed/25414348\" target=\"_blank\">Chelliah V et al. BioModels: ten-year  anniversary. Nucl. Acids Res. 2015, 43(Database  issue):D542-8</a>.</p></div><div class=\"dc:license\">  <p>To the extent possible under law, all copyright and related or  neighbouring rights to this encoded model have been dedicated to  the public domain worldwide. Please refer to   <a href=\"http://creativecommons.org/publicdomain/zero/1.0/\" title=\"Access to: CC0 1.0 Universal (CC0 1.0), Public Domain Dedication\">CC0  Public Domain Dedication</a> for more information.</p></div></body>    </notes>","dates":{"release":"2010-06-23T00:00:00Z","modification":"2025-07-15T09:55:11.566Z","creation":"2025-03-29T18:28:24.67Z"},"accession":"MODEL1006230091","cross_references":{"biomodels___db":["BIOMD0000000698"],"ec-code":["2.1.1.5","2.1.1.20","2.5.1.6","2.1.1.13","4.2.1.22","3.3.1.1"],"pubmed":["14637052"],"kegg___compound":["C00155","C00021","C02291","C00073","C00019"],"ncit":["C103149"],"chebi":["CHEBI:17755","CHEBI:67016","CHEBI:33442","CHEBI:17230","CHEBI:16811"],"mamo":["MAMO_0000046"],"go":["GO:0033528"],"kegg___orthology":["K06219","K00552","K00544","K01697"],"taxonomy":["9606"]}}