{"database":"biostudies-other","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["7"],"submitter":["Kieran Smallbone"],"journal":["PLoS computational biology"],"pagination":["e1002018"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/MODEL1105100000"],"repository":["biostudies-other"],"additional_accession":["21423717"],"pubmed_authors":["Kieran Smallbone"]},"is_claimable":false,"name":"Shlomi2011 - Warburg effect, metabolic model","description":"<notes xmlns=\"http://www.sbml.org/sbml/level2/version4\">      <body xmlns=\"http://www.w3.org/1999/xhtml\">        <div class=\"dc:title\">Shlomi2011 - Warburg effect, metabolic model</div>        <div class=\"dc:description\">          <p>Using a genome-scale human metabolic network model accounting for stoichiometric and enzyme solvent capacity considerations, this model shows that the Warburg effect (a classical hallmark of cancer metabolism) is a direct consequence of the metabolic adaptation of cancer cells to increase biomass production rate.</p>        </div>        <div class=\"dc:bibliographicCitation\">          <p>This model is described in the article:</p>          <div class=\"bibo:title\">            <a href=\"http://identifiers.org/pubmed/21423717\" title=\"Access to this publication\">Genome-scale metabolic modeling elucidates the role of proliferative adaptation in causing the Warburg effect.</a>          </div>          <div class=\"bibo:authorList\">Shlomi T, Benyamini T, Gottlieb E, Sharan R, Ruppin E</div>          <div class=\"bibo:Journal\">PLoS Computational Biology. 2011; 7(3):e1002018</div>          <p>Abstract:</p>          <div class=\"bibo:abstract\">            <p>The Warburg effect - a classical hallmark of cancer metabolism - is a counter-intuitive phenomenon in which rapidly proliferating cancer cells resort to inefficient ATP production via glycolysis leading to lactate secretion, instead of relying primarily on more efficient energy production through mitochondrial oxidative phosphorylation, as most normal cells do. The causes for the Warburg effect have remained a subject of considerable controversy since its discovery over 80 years ago, with several competing hypotheses. Here, utilizing a genome-scale human metabolic network model accounting for stoichiometric and enzyme solvent capacity considerations, we show that the Warburg effect is a direct consequence of the metabolic adaptation of cancer cells to increase biomass production rate. The analysis is shown to accurately capture a three phase metabolic behavior that is observed experimentally during oncogenic progression, as well as a prominent characteristic of cancer cells involving their preference for glutamine uptake over other amino acids.</p>          </div>        </div>        <div class=\"dc:publisher\">          <p>This model is hosted on        <a href=\"http://www.ebi.ac.uk/biomodels/\">BioModels Database</a>            and identified by:        <a href=\"http://identifiers.org/biomodels.db/MODEL1105100000\">MODEL1105100000</a>            .        </p>        <p>To cite BioModels Database, please use:        <a href=\"http://identifiers.org/pubmed/20587024\" title=\"Latest BioModels Database publication\">BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models</a>            .        </p>    </div>    <div class=\"dc:license\">      <p>To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to        <a href=\"http://creativecommons.org/publicdomain/zero/1.0/\" title=\"Access to: CC0 1.0 Universal (CC0 1.0), Public Domain Dedication\">CC0 Public Domain Dedication</a>            for more information.        </p>  </div></body></notes>","dates":{"release":"2011-05-10T00:00:00Z","modification":"2025-07-15T09:35:29.06Z","creation":"2025-03-30T20:16:15.679Z"},"accession":"MODEL1105100000","cross_references":{"pubmed":["21423717"],"taxonomy":["9606"],"unknown":["GO:0006096"]}}