<HashMap><database>biostudies-other</database><scores/><additional><omics_type>Unknown</omics_type><volume>75</volume><submitter>Lucian Smith</submitter><journal>Annals of the rheumatic diseases</journal><pagination>449-458</pagination><species>Mus musculus</species><full_dataset_link>https://www.ebi.ac.uk/biostudies/studies/MODEL1402200004</full_dataset_link><repository>biostudies-other</repository><additional_accession>25475114</additional_accession><pubmed_authors>Krishna Kumar Tiwari</pubmed_authors><pubmed_authors>Lucian Smith</pubmed_authors><pubmed_authors>Carole Proctor</pubmed_authors></additional><is_claimable>false</is_claimable><name>Hui2016 - Age-related changes in articular cartilage</name><description>&lt;notes xmlns="http://www.sbml.org/sbml/level2/version4">      &lt;body xmlns="http://www.w3.org/1999/xhtml">        &lt;div class="dc:title">Hui2014 - Age-related changes in articularcartilage&lt;/div>&lt;div class="dc:bibliographicCitation">  &lt;p>This model is described in the article:&lt;/p>  &lt;div class="bibo:title">    &lt;a href="http://identifiers.org/doi/doi:%2010.1136/annrheumdis-2014-206295" title="Access to this publication">Oxidative changes and    signalling pathways are pivotal in initiating age-related    changes in articular cartilage&lt;/a>  &lt;/div>  &lt;div class="bibo:authorList">Wang Hui1, David A Young1, Andrew D  Rowan1, Xin Xu2, Tim E Cawston1, Carole J Proctor1,3&lt;/div>  &lt;div class="bibo:Journal">Annals of the Rheumatic Diseases&lt;/div>  &lt;p>Abstract:&lt;/p>  &lt;div class="bibo:abstract">    &lt;p>Objective: To use a computational approach to investigate    the cellular and extracellular matrix changes that occur with    age in the knee joints of mice. Methods: Knee joints from an    inbred C57/BL1/6 (ICRFa) mouse colony were harvested at    3–30?months of age. Sections were stained with H&amp;amp;E,    Safranin-O, Picro-sirius red and antibodies to matrix    metalloproteinase-13 (MMP-13), nitrotyrosine, LC-3B, Bcl-2, and    cleaved type II collagen used for immunohistochemistry. Based    on this and other data from the literature, a computer    simulation model was built using the Systems Biology Markup    Language using an iterative approach of data analysis and    modelling. Individual parameters were subsequently altered to    assess their effect on the model. Results: A progressive loss    of cartilage matrix occurred with age. Nitrotyrosine, MMP-13    and anaplastic lymphoma kinase (ALK1) staining in cartilage    increased with age with a concomitant decrease in LC-3B and    Bcl-2. Stochastic simulations from the computational model    showed a good agreement with these data, once transforming    growth factor-? signalling via ALK1/ALK5 receptors was    included. Oxidative stress and the interleukin 1 pathway were    identified as key factors in driving the cartilage breakdown    associated with ageing. Conclusions: A progressive loss of    cartilage matrix and cellularity occurs with age. This is    accompanied with increased levels of oxidative stress,    apoptosis and MMP-13 and a decrease in chondrocyte autophagy.    These changes explain the marked predisposition of joints to    develop osteoarthritis with age. Computational modelling    provides useful insights into the underlying mechanisms    involved in age-related changes in musculoskeletal tissues.&lt;/p>  &lt;/div>&lt;/div>&lt;div class="dc:publisher">  &lt;p>This model is hosted on   &lt;a href="http://www.ebi.ac.uk/biomodels/">BioModels Database&lt;/a>  and identified by:   &lt;a href="http://identifiers.org/biomodels.db/BIOMD0000000560">BIOMD0000000560&lt;/a>.&lt;/p>  &lt;p>To cite BioModels Database, please use:   &lt;a href="http://identifiers.org/pubmed/20587024" title="Latest BioModels Database publication">BioModels Database:  An enhanced, curated and annotated resource for published  quantitative kinetic models&lt;/a>.&lt;/p>&lt;/div>&lt;div class="dc:license">  &lt;p>To the extent possible under law, all copyright and related or  neighbouring rights to this encoded model have been dedicated to  the public domain worldwide. Please refer to   &lt;a href="http://creativecommons.org/publicdomain/zero/1.0/" title="Access to: CC0 1.0 Universal (CC0 1.0), Public Domain Dedication">CC0  Public Domain Dedication&lt;/a> for more information.&lt;/p>&lt;/div>&lt;/body>    &lt;/notes></description><dates><release>2014-02-20T00:00:00Z</release><modification>2025-07-15T10:01:00.985Z</modification><creation>2025-03-29T17:54:45.211Z</creation></dates><accession>MODEL1402200004</accession><cross_references><biomodels___db>BIOMD0000000560</biomodels___db><pubmed>25475114</pubmed><pr>PR:000037070</pr><chebi>CHEBI:26523</chebi><go>GO:0005623</go><go>GO:0005634</go><go>GO:0016020</go><go>GO:0065010</go><go>GO:0008305</go><go>GO:0051216</go><go>GO:0001322</go><go>GO:0005764</go><pato>PATO:0000070</pato><pato>PATO:0001444</pato><doid>DOID:8398</doid><taxonomy>10090</taxonomy><fma>FMA:35175</fma><uniprot>P01583</uniprot><uniprot>Q14457</uniprot><uniprot>Q16539</uniprot><uniprot>Q13950</uniprot><uniprot>Q15797</uniprot><uniprot>P10415</uniprot><uniprot>Q15109</uniprot><uniprot>P36897</uniprot><uniprot>P37023</uniprot><uniprot>P16112</uniprot><uniprot>Q9UNA0</uniprot><uniprot>Q04206</uniprot><uniprot>Q07812</uniprot><uniprot>P45452</uniprot><uniprot>O15105</uniprot><uniprot>P48436</uniprot><uniprot>P02458</uniprot><uniprot>P08253</uniprot><uniprot>P01137</uniprot><uniprot>P42574</uniprot><uniprot>Q15796</uniprot><uniprot>Q13485</uniprot><uniprot>P25963</uniprot><uniprot>P00441</uniprot></cross_references></HashMap>