{"database":"biostudies-other","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"submitter":["Pierre Millard"],"journal":["PLoS ONE"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/MODEL1505110000"],"repository":["biostudies-other"],"additional_accession":["10.1371/journal.pcbi.1005396"],"pubmed_authors":["Pierre Millard"]},"is_claimable":false,"name":"Millard2016 - E. coli central carbon and energy metabolism","description":"<notes xmlns=\"http://www.sbml.org/sbml/level2/version4\">      <body xmlns=\"http://www.w3.org/1999/xhtml\">        <div class=\"dc:title\">Millard2016 - E. coli central carbon andenergy metabolism</div><div class=\"dc:bibliographicCitation\">  <p>This model is described in the article:</p>  <div class=\"bibo:title\">    <a href=\"http://identifiers.org/doi/10.1371/journal.pcbi.1005396\" title=\"Access to this publication\">Metabolic regulation is    sufficient for global and robust coordination of glucose    uptake, catabolism, energy production and growth in Escherichia    coli</a>  </div>  <div class=\"bibo:authorList\">Pierre Millard , Kieran Smallbone,  Pedro Mendes</div>  <div class=\"bibo:Journal\">PLoS ONE</div>  <p>Abstract:</p>  <div class=\"bibo:abstract\">    <p>The metabolism of microorganisms is regulated through two    main mechanisms: changes of enzyme capacities as a consequence    of gene expression modulation (“hierarchical    control”) and changes of enzyme activities through    metabolite-enzyme interactions. An increasing body of evidence    indicates that hierarchical control is insufficient to explain    metabolic behaviors, but the system-wide impact of metabolic    regulation remains largely uncharacterized. To clarify its    role, we developed and validated a detailed kinetic model of    Escherichia coli central metabolism that links growth to    environment. Metabolic control analyses confirm that the    control is widely distributed across the network and highlight    strong interconnections between all the pathways. Exploration    of the model solution space reveals that several robust    properties emerge from metabolic regulation, from the molecular    level (e.g. homeostasis of total metabolite pool) to the    overall cellular physiology (e.g. coordination of carbon    uptake, catabolism, energy and redox production, and growth),    while allowing a large degree of flexibility at most individual    metabolic steps. These properties have important physiological    implications for E. coli and significantly expand the    self-regulating capacities of its metabolism.</p>  </div></div><div class=\"dc:publisher\">  <p>This model is hosted on   <a href=\"http://www.ebi.ac.uk/biomodels/\">BioModels Database</a>  and identified by:   <a href=\"http://identifiers.org/biomodels.db/MODEL1505110000\">MODEL1505110000</a>.</p>  <p>To cite BioModels Database, please use:   <a href=\"http://identifiers.org/pubmed/20587024\" title=\"Latest BioModels Database publication\">BioModels Database:  An enhanced, curated and annotated resource for published  quantitative kinetic models</a>.</p></div><div class=\"dc:license\">  <p>To the extent possible under law, all copyright and related or  neighbouring rights to this encoded model have been dedicated to  the public domain worldwide. Please refer to   <a href=\"http://creativecommons.org/publicdomain/zero/1.0/\" title=\"Access to: CC0 1.0 Universal (CC0 1.0), Public Domain Dedication\">CC0  Public Domain Dedication</a> for more information.</p></div></body>    </notes>","dates":{"release":"2015-05-11T00:00:00Z","modification":"2025-07-15T09:15:57.961Z","creation":"2025-03-30T21:55:15.033Z"},"accession":"MODEL1505110000","cross_references":{"mamo":["MAMO_0000046"],"doi":["10.1371/journal.pcbi.1005396"]}}