{"database":"biostudies-other","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["12"],"submitter":["Ludovic Cottret"],"journal":["PLoS pathogens"],"pagination":["e1005939"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/MODEL1612020000"],"repository":["biostudies-other"],"additional_accession":["27732672"],"pubmed_authors":["Ludovic Cottret"]},"is_claimable":false,"name":"Peyraud2016 - Metabolic reconstruction (iRP1476) of Ralstonia solanacearum GMI1000","description":"<notes xmlns=\"http://www.sbml.org/sbml/level2\">      <body xmlns=\"http://www.w3.org/1999/xhtml\">        <div class=\"dc:title\">Peyraud2016 - Metabolic reconstruction(iRP1476) of Ralstonia solanacearum GMI1000</div><div class=\"dc:bibliographicCitation\">  <p>This model is described in the article:</p>  <div class=\"bibo:title\">    <a href=\"http://identifiers.org/pubmed/27732672\" title=\"Access to this publication\">A Resource Allocation    Trade-Off between Virulence and Proliferation Drives Metabolic    Versatility in the Plant Pathogen Ralstonia solanacearum.</a>  </div>  <div class=\"bibo:authorList\">Peyraud R, Cottret L, Marmiesse L,  Gouzy J, Genin S.</div>  <div class=\"bibo:Journal\">PLoS Pathog. 2016 Oct; 12(10):  e1005939</div>  <p>Abstract:</p>  <div class=\"bibo:abstract\">    <p>Bacterial pathogenicity relies on a proficient metabolism    and there is increasing evidence that metabolic adaptation to    exploit host resources is a key property of infectious    organisms. In many cases, colonization by the pathogen also    implies an intensive multiplication and the necessity to    produce a large array of virulence factors, which may represent    a significant cost for the pathogen. We describe here the    existence of a resource allocation trade-off mechanism in the    plant pathogen R. solanacearum. We generated a genome-scale    reconstruction of the metabolic network of R. solanacearum,    together with a macromolecule network module accounting for the    production and secretion of hundreds of virulence determinants.    By using a combination of constraint-based modeling and    metabolic flux analyses, we quantified the metabolic cost for    production of exopolysaccharides, which are critical for    disease symptom production, and other virulence factors. We    demonstrated that this trade-off between virulence factor    production and bacterial proliferation is controlled by the    quorum-sensing-dependent regulatory protein PhcA. A phcA mutant    is avirulent but has a better growth rate than the wild-type    strain. Moreover, a phcA mutant has an expanded metabolic    versatility, being able to metabolize 17 substrates more than    the wild-type. Model predictions indicate that metabolic    pathways are optimally oriented towards proliferation in a phcA    mutant and we show that this enhanced metabolic versatility in    phcA mutants is to a large extent a consequence of not paying    the cost for virulence. This analysis allowed identifying    candidate metabolic substrates having a substantial impact on    bacterial growth during infection. Interestingly, the    substrates supporting well both production of virulence factors    and growth are those found in higher amount within the plant    host. These findings also provide an explanatory basis to the    well-known emergence of avirulent variants in R. solanacearum    populations in planta or in stressful environments.</p>  </div></div><div class=\"dc:publisher\">  <p>This model is hosted on   <a href=\"http://www.ebi.ac.uk/biomodels/\">BioModels Database</a>  and identified by:   <a href=\"http://identifiers.org/biomodels.db/MODEL1612020000\">MODEL1612020000</a>.</p>  <p>To cite BioModels Database, please use:   <a href=\"http://identifiers.org/pubmed/20587024\" title=\"Latest BioModels Database publication\">BioModels Database:  An enhanced, curated and annotated resource for published  quantitative kinetic models</a>.</p></div><div class=\"dc:license\">  <p>To the extent possible under law, all copyright and related or  neighbouring rights to this encoded model have been dedicated to  the public domain worldwide. Please refer to   <a href=\"http://creativecommons.org/publicdomain/zero/1.0/\" title=\"Access to: CC0 1.0 Universal (CC0 1.0), Public Domain Dedication\">CC0  Public Domain Dedication</a> for more information.</p></div></body>    </notes>","dates":{"release":"2016-12-02T00:00:00Z","modification":"2025-07-14T17:55:32.933Z","creation":"2025-03-30T22:39:04.368Z"},"accession":"MODEL1612020000","cross_references":{"pubmed":["27732672"]}}