{"database":"biostudies-other","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["68"],"submitter":["Nicolas Le Novère"],"journal":["Molecular cell"],"pagination":["566-580.e10"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/MODEL1704190000"],"repository":["biostudies-other"],"additional_accession":["29056325"],"pubmed_authors":["Nicolas Le Novère"]},"is_claimable":false,"name":"Phosphatase activities on PI(3,4,5)P3 and PI(3,4)P2","description":"<notes xmlns=\"http://www.sbml.org/sbml/level2/version4\">      <body xmlns=\"http://www.w3.org/1999/xhtml\">        <div class=\"dc:title\">Phosphatase activities on PI(3,4,5)P3 andPI(3,4)P2</div><div class=\"dc:description\"><pre style=\"\">This model describes the action of various phosphatases onPI(3,4,5)P3 and PI(3,4)P2, in response to a stimulation by EGF. Itcontains boolean switches to simulate knock-down and knock-out ofphosphatases as well as inhibition of PI3 kinase.<br />  </pre></div><div class=\"dc:bibliographicCitation\">  <p>This model is described in the article:</p>  <div class=\"bibo:title\">    <a href=\"http://identifiers.org/doi/10.1016/j.molcel.2017.09.024\" title=\"Access to this publication\">PTEN Regulates PI(3,4)P2    Signaling Downstream of Class I PI3K</a>  </div>  <div class=\"bibo:authorList\">Mouhannad Malek, Anna Kielkowska,  Tamara Chessa, Karen E. Anderson, David Barneda, P?nar Pir,  Hiroki Nakanishi, Satoshi Eguchi, Atsushi Koizumi, Junko Sasaki,  Véronique Juvin, Vladimir Y. Kiselev, Izabella Niewczas,  Alexander Gray, Alexandre Valayer, Dominik Spensberger, Marine  Imbert, Sergio Felisbino, Tomonori Habuchi, Soren Beinke, Sabina  Cosulich, Nicolas Le Novère, Takehiko Sasaki, Jonathan  Clark, Phillip T. Hawkins and Len R. Stephens</div>  <div class=\"bibo:Journal\">Molecular Cell</div>  <p>Abstract:</p>  <div class=\"bibo:abstract\">    <p>The PI3K signaling pathway regulates cell growth and    movement and is heavily mutated in cancer. Class I PI3Ks    synthesize the lipid messenger PI(3,4,5)P3. PI(3,4,5)P3 can be    dephosphorylated by 3- or 5-phosphatases, the latter producing    PI(3,4)P2. The PTEN tumor suppressor is thought to function    primarily as a PI(3,4,5)P3 3-phosphatase, limiting activation    of this pathway. Here we show that PTEN also functions as a    PI(3,4)P2 3-phosphatase, both in vitro and in vivo. PTEN is a    major PI(3,4)P2 phosphatase in Mcf10a cytosol, and loss of PTEN    and INPP4B, a known PI(3,4)P2 4-phosphatase, leads to    synergistic accumulation of PI(3,4)P2, which correlated with    increased invadopodia in epidermal growth factor    (EGF)-stimulated cells. PTEN deletion increased PI(3,4)P2    levels in a mouse model of prostate cancer, and it inversely    correlated with PI(3,4)P2 levels across several EGF-stimulated    prostate and breast cancer lines. These results point to a role    for PI(3,4)P2 in the phenotype caused by loss-of-function    mutations or deletions in PTEN.</p>  </div></div><div class=\"dc:publisher\">  <p>This model is hosted on   <a href=\"http://www.ebi.ac.uk/biomodels/\">BioModels Database</a>  and identified by:   <a href=\"http://identifiers.org/biomodels.db/MODEL1704190000\">MODEL1704190000</a>.</p>  <p>To cite BioModels Database, please use:   <a href=\"http://identifiers.org/pubmed/25414348\" target=\"_blank\">Chelliah V et al. BioModels: ten-year  anniversary. Nucl. Acids Res. 2015, 43(Database  issue):D542-8</a>.</p></div><div class=\"dc:license\">  <p>To the extent possible under law, all copyright and related or  neighbouring rights to this encoded model have been dedicated to  the public domain worldwide. Please refer to   <a href=\"http://creativecommons.org/publicdomain/zero/1.0/\" title=\"Access to: CC0 1.0 Universal (CC0 1.0), Public Domain Dedication\">CC0  Public Domain Dedication</a> for more information.</p></div></body>    </notes>","dates":{"release":"2017-04-19T00:00:00Z","modification":"2025-07-14T17:54:51.026Z","creation":"2025-03-30T22:39:52.212Z"},"accession":"MODEL1704190000","cross_references":{"ec-code":["3.1.3.86"],"pubmed":["29056325"],"chebi":["CHEBI:37530","CHEBI:18348","CHEBI:90524","CHEBI:26036","CHEBI:16618","CHEBI:17283","CHEBI:16152"],"mamo":["MAMO_0000046"],"rhea":["25531"],"go":["GO:0005623","GO:0034485","GO:0034593","GO:0005154","GO:0046854","GO:0042058","GO:0035004","GO:0042059","GO:0046856"],"bto":["BTO:0001939"],"kegg___reaction":["R09827"],"uniprot":["P60484","Q96PE3","O15357","P00533","P01133","O15327"],"atcc":["CRL-10317"],"unknown":["null"]}}