{"database":"biostudies-other","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"submitter":["Constantin Pape"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-BAIR1"],"repository":["biostudies-other"],"pubmed_authors":["Fynn Beuttenmüller","Constantin Pape"],"additional_accession":[]},"is_claimable":false,"name":"Nucleus segmentation for fluorescence microscopy","description":"This model segments nuclei in fluorescence microscopy images.\nIt predicts boundary maps and foreground probabilities for nucleus segmentation in\ndifferent light microscopy modalities, mainly with DAPI staining.\nThe boundaries can be processed e.g. with Multicut or Watershed to obtain an instance segmentation.","dates":{"release":"2022-06-15T00:00:00Z","modification":"2026-05-27T14:42:24.809Z","creation":"2025-07-11T13:50:21.045Z"},"accession":"S-BAIR1","cross_references":{"Zenodo":["https://doi.org/10.5281/zenodo.5764892"],"Validation script":["https://github.com/constantinpape/torch-em/tree/main/experiments/dsb/validate_model.py"],"Training library":["https://doi.org/10.5281/zenodo.5108852"],"Training script":["https://github.com/constantinpape/torch-em/tree/main/experiments/dsb"],"BioImage___IO":["https://bioimage.io/#/artifacts/affable-shark"]}}