{"database":"biostudies-other","file_versions":[],"scores":null,"additional":{"omics_type":["Unknown"],"volume":["21(13)"],"submitter":["Pongor S"],"journal":["Nucleic acids research"],"pagination":["3111-5"],"full_dataset_link":["https://www.ebi.ac.uk/biostudies/studies/S-EPMC309739"],"abstract":["SBASE 2.0 is the second release of SBASE, a collection of annotated protein domain sequences. SBASE entries represent various structural, functional, ligand-binding and topogenic segments of proteins [Pongor, S. et al. (1993) Prot. Eng., in press]. This release contains 34,518 entries provided with standardized names and it is cross-referenced to the major protein and nucleic acid databanks as well as to the PROSITE catalog of protein sequence patterns [Bairoch, A. (1992) Nucl. Acids Res., 20 suppl, 2013-2018]. SBASE can be used for establishing domain homologies using different database-search tools such as FASTA [Lipman and Pearson (1985) Science, 227, 1436-1441], FASTDB [Brutlag et al. (1990) Comp. Appl. Biosci., 6, 237-245] or BLAST3 [Altschul and Lipman (1990) Proc. Natl. Acad. Sci. USA, 87, 5509-5513] which is especially useful in the case of loosely defined domain types for which efficient consensus patterns can not be established. SBASE 2.0 and a set of search and retrieval tools are freely available on request to the authors or by anonymous 'ftp' file transfer from mean value of ftp.icgeb.trieste.it."],"repository":["biostudies-other"],"pmcid":["PMC309739"],"data_source":["Europe PMC"],"pubmed_authors":["Bevilacqua V","Pongor S","Cserzo M","Simon G","Skerl V","Hatsagi Z"],"additional_accession":[]},"is_claimable":false,"name":"The SBASE protein domain library, release 2.0: a collection of annotated protein sequence segments.","description":"SBASE 2.0 is the second release of SBASE, a collection of annotated protein domain sequences. SBASE entries represent various structural, functional, ligand-binding and topogenic segments of proteins [Pongor, S. et al. (1993) Prot. Eng., in press]. This release contains 34,518 entries provided with standardized names and it is cross-referenced to the major protein and nucleic acid databanks as well as to the PROSITE catalog of protein sequence patterns [Bairoch, A. (1992) Nucl. Acids Res., 20 suppl, 2013-2018]. SBASE can be used for establishing domain homologies using different database-search tools such as FASTA [Lipman and Pearson (1985) Science, 227, 1436-1441], FASTDB [Brutlag et al. (1990) Comp. Appl. Biosci., 6, 237-245] or BLAST3 [Altschul and Lipman (1990) Proc. Natl. Acad. Sci. USA, 87, 5509-5513] which is especially useful in the case of loosely defined domain types for which efficient consensus patterns can not be established. SBASE 2.0 and a set of search and retrieval tools are freely available on request to the authors or by anonymous 'ftp' file transfer from mean value of ftp.icgeb.trieste.it.","dates":{"release":"1993-01-01T00:00:00Z","publication":"1993 Jul","modification":"2019-03-27T00:49:54Z","creation":"2019-03-27T00:49:54Z"},"accession":"S-EPMC309739","cross_references":{"gen":["J02593","J05100"],"pubmed":["8332532"],"sprot":["P05140"],"doi":["10.1093/nar/21.13.3111 "]}}