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Prostate tissues collected post-robotic prostatectomy surgery and containing high-density tumor areas were used for this study. \tDNA samples in the study were extracted from tissue and blood, which were collected prior to the prostatectomy surgery.
"],"full_dataset_link":["https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000311"],"study_history":[null],"attribution":["Co-Principal Investigators - Mark B. Gerstein, PhD - Yale University, New Haven, CT, USA","Co-Principal Investigators - Mark A. Rubin, MD - Weill Cornell Medical College, New York, NY, USA","Funding Source - R01CA125612 - National Institutes of Health, Bethesda, MD, USA","Funding Source - 5R44HG004237 - National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA","Funding Source - RR19895 - National Cancer Institute, National Institutes of Health, Bethesda, MD, USA"],"repository":["dbGaP"],"description_synonyms":["boundary, Data Set., ribonucleic acid, Acid, oligonucleotide random primer, RNA, Ribonucleic, Artefact, ribose nucleic acid, Non Polyadenylated RNA, ribonucleic acids, Non-Polyadenylated, Statistic, RNS, Ribonucleic Acid, Artefacts, INSDC_feature:misc_RNA, paired, Non-Polyadenylated RNA, RANDOM, yeast nucleic acid, Ribonukleinsaeure, Artifact, breakpoint, Calibrations, Gene Products, pentosenucleic acids, Ribonucleic acids, ORW1, END, Non Polyadenylated, HHT1, RNA Gene Products, Random selection by shearing"],"additional_accession":[]},"is_claimable":false,"name":"FusionSeq: Finding Fusions with Paired-End RNA-Seq","description":"We have developed FusionSeq to identify fusion transcripts from paired-end RNA-sequencing. FusionSeq includes filters to \tremove spurious candidate fusions with artifacts such as misalignments or random pairing of transcript fragments and it \tranks candidates according to several statistics. It also has a module to identify exact sequences at breakpoint junctions. \tFusionSeq detected known and novel fusions in a specially sequenced calibration data set, including 8 cancers with and \twithout known rearrangements.
","dates":{"last_modification":"2011-02-24","creation":"2010-10-20"},"accession":"phs000311","cross_references":{"MESH":["Prostatic Neoplasms"],"PMID":["20964841"]}}