{"database":"EGA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics"],"dataset_type":["N/A"],"full_dataset_link":["https://ega-archive.org/datasets/EGAD00001003770"],"sample_count":["24"],"description":["EGA dataset EGAD00001003770"],"repository":["EGA"],"title":["RNA-seq of iPSC-derived hepatocyte-like cells"],"name_synonyms":["Vasp, VASP, Data Set., DmelCG15112, ENHANCER OF ATNSI ACTIVITY, MENA, NDPP1, l(2)02029, Enb, enb, ENA, Ena, CG15112, ENA/VASP"],"description_synonyms":[", Ribonucleic, Plcgamma, PLC21c, IPS, CG3620, instrument configuration, NORPA, Hepatocyte, Fibroblast Derived IPS Cells, atado, hiPSC, PLC-gamma D, ref2p, Hepatic Cell, nofC, p145, parenchymal liver cell, Software Engineering, cytopathology, LG3 peptide, plc21, Non Polyadenylated, Computer Program, NorpA, RNA Gene Products, ALY|REF, Fibroblast-Derived IPS Cells, 2810441M03Rik, Biopsies, Polyadenylated Messenger, Open, Tissue, iecur, Computer Programs and Programming, HardwareType, CG12352, Endorepellin, hNAT5, BEF, HSPG, hSAN, PLC21C, plcbeta21c, REF, DmAAF34715, Mak3p, Base Pairings, distinct from, NAT13, Polyadenylated, ribose nucleic acid, DmelCG10360, ribonucleic acids, ref, RNA-seq, x12, plc-gammad, x13, Nat13, x16, Alexander cell, Source Softwares, Software Tools, Programs, Hepatic Cells, Ref2P, Program, Computer Applications, PLCgamma, ref(2)Po2, DmelCG3620, PLCgammaDmel, Ribonukleinsaeure, Computer Applications Software, Computer Applications Softwares, pentosenucleic acids, simple tissue, Ribonucleic acids, Softwares, HCS, Pcn, END, PLC-gammaD, x24, Plcbeta21C, Polyadenylated Messenger RNA, Acid, Non Polyadenylated mRNA, Software Applications, protein_coding_transcript, histopathology, instrument, SJA, parenchymal hepatic cell, Source Software, Fibroblast-Derived IPS, PLC-21, plc-gamma, Fibroblast-Derived, study protocol, plc-21, Non-Polyadenylated mRNA, SJS, Plc21, PLC&ygr, PRCAN, Applications, PLC8024, Cells, Fibroblast-Derived Induced Pluripotent Stem Cells, SJS1, Poly(A) RNA, 2600005K24Rik, Computer Software Applications, PLC-gamma, MRE18, DIP2, Perlecan, nat5, Fibroblast-Derived IPS Cell, Induced Pluripotent Stem Cell, Ref(2)P, NAT5P, Computer, NAT13P, per, IPS Cells, hardware, jecur, method, Messenger, Ref(2)p, method used in an experiment, p62, THOC4, Gene Products, Whole Transcriptome Shotgun Sequencing, CG4200, nat13, Alexander cells, Application, Open Source Softwares, Software Application, ALY/REF, Open Source Software, messenger RNA, Human Induced Pluripotent Stem Cells, Computer Software Application, DmelCG4574, Non-Polyadenylated RNA, template RNA, CdkA, Tools, Base Pair, PI-PLC, DmelCG12352, NAT5, Nat5, Hepatic, HHT1, ref(2)Pn, span, DmelCG4200, Applications Software, PLC-beta, plc21c, Open Source, RNA, Computer Software, Edg, liver parenchymal cell, ALY, mak3, Messenger RNA, ref(2)p, RNS, Cell, Tool, PLC[[Beta]], plc21C, anon-EST:Posey221, AW112078, Software Tool, Fibroblast Derived Induced Pluripotent Stem Cells, Poly(A)+ mRNA, yeast nucleic acid, INSDC_feature:mRNA, sequence, Polyadenylated RNA, PLCbeta, PLC-21C, Software, IPS Cell, Library, SAN, San, ribonucleic acid, Base Pairs, Poly(A)+ RNA, PLC, Plc, rof, mRNA, Poly(A) Tail, Non Polyadenylated RNA, Engineering, Non-Polyadenylated, CG4574, Ribonucleic Acid, 410I21.SP6, plan specification, san, Computer Programs, Livers, D16Jhu34, Applications Softwares, primary structure of sequence macromolecule., biopsy, CG10360, Mak3, ORW1, Polyadenylated mRNA, Human Induced Pluripotent Stem Cell, AI852380, MAK3"],"additional_accession":[]},"is_claimable":false,"name":"ena-DATASET-NIBR-01-10-2017-21:05:55:926-108 - samples","description":"We performed RNA-seq on polyA-enriched mRNA isolated from the original liver biopsy tissue (Liver tissue), primary liver cells (PLC), hepatocyte-like cells (HLCs) differentiated from induced pluripotent stem cells (iPSCs), and iPSCs. RNA libraries were prepared using the Illumina TruSeq Stranded mRNA Sample Preparation protocol (ref. RS-122-2101, Illumina, San Diego CA, US) and sequenced using the Illumina HiSeq2500 platform following the manufacturer’s protocol. Samples were sequenced in paired-end mode to a length of 2x76 base pairs. Images from the instrument were processed using the manufacturer’s software to generate FASTQ sequence files.","dates":{"updated":"2020-07-16 15:33:08"},"accession":"EGAD00001003770","cross_references":{"TAXONOMY":["9606"],"EGA":["EGAC00001000747","EGAS00001002676"]}}