<HashMap><database>EGA</database><scores/><additional><omics_type>Genomics</omics_type><dataset_type>Illumina HiSeq 2000;ILLUMINA</dataset_type><full_dataset_link>https://ega-archive.org/datasets/EGAD00001003970</full_dataset_link><sample_count>7</sample_count><description>EGA dataset EGAD00001003970</description><repository>EGA</repository><title>SCLC study MGH - WES dataset</title><name_synonyms>Vasp, VASP, DmelCG15112, ENHANCER OF ATNSI ACTIVITY, Data Set, MENA, NDPP1, l(2)02029, Enb, enb, ENA, Ena, CG15112, 2018., ENA/VASP</name_synonyms><description_synonyms>Complete Exome Sequencings, DNS, Malignant Neoplasm, Edg, (Deoxyribonucleotide)n, Complete Exome, fractured, selection process, DNAn+1, Neoplasms, Arts, average., Exome, Benign Neoplasm, split, Double-Stranded, Tumor, Malignant, fragmented, Deoxyribonucleic acids, (Deoxyribonucleotide)n+m, Exome Sequencing, Benign, Deoxyribonucleic Acid, BP protocol, Neoplasm, hemorrhaged, Whole Transcriptome, Transcriptome Sequencing, ds-DNA, desoxyribose nucleic acid, END, Library, torn, WES, Complete Transcriptome, thymus nucleic acid, Industrial, Complete, Complete Transcriptome Sequencing, Exome Sequencings, Industrial Arts, Malignancy, Complete Exome Sequencing, Sonications, Whole Transcriptome Sequencing, cracked, Double Stranded, Benign Neoplasms, Deoxyribonucleic acid, Cancers, Sequencing, sample population, Malignant Neoplasms, Neoplasias, Whole Exome, Indexes, Whole, sample, ds DNA, Whole Exome Sequencing, Desoxyribonukleinsaeure, Double-Stranded DNA, Malignancies, (Deoxyribonucleotide)m, DNA, deoxyribonucleic acids, DNAn, ORW1, Transcriptome Sequencings, Neoplasia, HHT1, Cancer, Tumors</description_synonyms></additional><is_claimable>false</is_claimable><name>ena-DATASET-RTL-20-02-2018-13:52:03:017-713 - samples</name><description>For whole-exome sequencing 1 µg of DNA from fresh-frozen tumors was fragmented by sonication technology (for DNA from fresh-frozen tumors: Bioruptor, diagenode, Liѐge, Belgium; for DNA from FFPE material: Covaris). The fragments were end-repaired and adaptor-ligated, including incorporation of sample index barcodes. After size selection, libraries were subjected to an enrichment process with Sure select XT (Agilent). The final libraries were sequenced with a paired-end 2×75 bp protocol for an average coverage of 100-120x</description><dates><updated>2020-07-16 15:33:08</updated></dates><accession>EGAD00001003970</accession><cross_references><TAXONOMY>9606</TAXONOMY><EGA>EGAC00001000064</EGA><EGA>EGAS00001002853</EGA></cross_references></HashMap>