EGAGenomicsIllumina HiSeq 2500;ILLUMINAhttps://ega-archive.org/datasets/EGAD0000100398489EGA dataset EGAD00001003984EGAVasp, VASP, DmelCG15112, ENHANCER OF ATNSI ACTIVITY, Data Set, MENA, NDPP1, l(2)02029, Enb, enb, ENA, Ena, CG15112, 2018., ENA/VASPRibonucleic, Formol, l(1)VE614, Mammalian Oviduct, chemical properties, DNS, (Deoxyribonucleotide)n, Uterine Tube, Neoplasms, Blood, Mammalian, Salpinx, Benign Neoplasm, Hematoxiline, number, SCF receptor activity, D4Ertd659e, tuba uterina, Xkl-1, Tumor, Malignant, presence, Deoxyribonucleic acids, Cut, KL receptor activity, Gsfsco1, Deoxyribonucleic Acid, scfr, l(1)7Ba, l(1)7Bb, cis-(+)-, Uterine Salpinx, Methanal, Parafilm, FLASH, PBMC, Gene Products, SCO5, tumor sample, 4, SCO1, 7, 9, Gsfsow3, SCFR, Gsfsco5, Non Polyadenylated, RNA Gene Products, SOW3, Multicase, average, Fdc, thymus nucleic acid, Malignancy, Academic, Mammalian Oviducts, Formaldehyd, Tissue, Oxomethane, Fallopian Tube, Hydroxybrasilin, nucleic acid library construction, Hemotoxylin, Double Stranded, nucleic acid library preparation, Deoxyribonucleic acid, W, RIP25, Oviduct, kf, CG11387, high grade, serous cystadenocarcinoma, Non-Polyadenylated RNA, Neoplasias, Salpinges, DmelCG11387, Formalin, mKIAA1315, HHT1., Clients, Oviducts, CT, 10(6H)-pentol, Bs, Malignancies, Double-Stranded DNA, (Deoxyribonucleotide)m, deoxyribonucleic acids, fallopian tubes, DNAn, salpinx, Sl, chemical structure, HHT1, chemical composition, Uterine Salpinges, Cancer, Tumors, WGS, Tube, proto-oncogene c-Kit, RNA, Malignant Neoplasm, chemical characterization, Edg, Hydroxybrazilin, whole blood, ribose nucleic acid, female paramesonephric duct, DNAn+1, Ct, ribonucleic acids, Haematoxylon, Tr-kit, RNS, Double-Stranded, Tubes, CED-4, Uterine, Client, (Deoxyribonucleotide)n+m, PBT, count in organism, Benign, Review Literature, AA387232, KIT ligand receptor activity, yeast nucleic acid, Ribonukleinsaeure, Neoplasm, kl1-A, 11b-dihydro-, pentosenucleic acids, FORMALIN, salpinges, Ribonucleic acids, simple tissue, BcDNA:GH10590, ds-DNA, KIT, desoxyribose nucleic acid, END, fixed, XKrk1, grade 3/4, tyrosine-protein kinase Kit, ribonucleic acid, Acid, pbt, mammalian oviduct, c-KIT, Peripheral Blood, NOS (morphologic abnormality), Review, library construction, Non Polyadenylated RNA, Non-Polyadenylated, Benign Neoplasms, uterine tube (sensu Mammalia), paramesonephric duct of female, Benz(b)indeno(1, Cancers, Ribonucleic Acid, kit, whole genome, chemical content, CD117, 2-d)pyran-3, serous carcinoma, Methylene oxide, Malignant Neoplasms, Fallopian, Reticuloendothelial System, c-kit, Oxomethylene, C-Kit, Patient, Uterine Tubes, 6a, Ssm, PBMCs, ds DNA, Desoxyribonukleinsaeure, xkl-1, Review of Reported Cases, DNA, ORW1, other neoplasm, Neoplasia, krk1falseena-DATASET-BCCA-26-02-2018-20:02:25:206-666 - samplesEach tumor sample was cut into three pieces, yielding two end-pieces for cryovials and a middle portion placed in 10% buffered formalin. End pieces were homogenized manually and with a paddle blender (Stomacher). All paraffin-embedded blocks, including formalin-fixed tumor samples and molecular-fixed fallopian tubes, were sectioned and stained with hematoxylin and eosin prior to expert histopathological review to confirm the presence of high grade serous carcinoma. Homogenized end pieces were then flash frozen and later used for WGS. For all tumor and matched normal (peripheral blood) samples, DNA was extracted with the Qiagen AllPrep DNA/RNA kit (tumor samples from patients 25,26,28-32) or the Qiagen Blood and Tissue Extraction Kit (tumor samples from patients 1-4,7,9-17, and all blood samples). For all tumor and normal samples, DNA extraction was followed by library construction and sequencing using Illumina HiSeq2500 whole genome shotgun v4 chemistry with paired-end 125bp reads.2022-11-22 12:10:03EGAD000010039849606EGAC00000000011EGAS00001002839