{"database":"EGA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics"],"dataset_type":["N/A"],"full_dataset_link":["https://ega-archive.org/datasets/EGAD00001004280"],"sample_count":["78"],"description":["EGA dataset EGAD00001004280"],"repository":["EGA"],"title":["RNA-Seq files for St. Jude Clinical Pilot"],"name_synonyms":["Total RNA Sequencing, WHOLE TRANSCRIPTOME SEQUENCING, Whole Transcriptome Shotgun Sequencing, RNA Sequencing, Transcriptome Sequencing, WTSS, RNA-Seq, Total RNA-Seq, RNA-seq  (transcriptome sequencing), RNAseq, Whole-Transcriptome Sequencing, Whole Transcriptome Sequencing."],"description_synonyms":["Pilot, whole exome, BamF, bim, Transcriptome, biml, Malignant Neoplasm, Papers, Data Set, BamC, Transcriptome Profile, Neoplasms, bam, Expression Profiles, Benign Neoplasm, PILOT, Genome Sequencing, Gene Expression Profile, Gene, ham, BOD, Profiles, Tumor, Malignant, fs(3)neo61, Gene Expression, CG10422, Complete Genome, Benign, MT, Transcriptome Profiles., Aviators, Expression Signatures, Gene Expression Signatures, Neoplasm, Co-Pilot, bim-beta7, Gene Expression Signature, bod, DmelCG10422, Expression Profile, bimel, Co-Pilots, average, primary cancer, Complete, Whole Genome, Malignancy, HCAP, bim-beta6, Aviator, Profile, Complete Genome Sequencing, Benign Neoplasms, alpha, Cancers, whole genome, CDLS3, BMH, malignant tumor, Signatures, Sequencing, Malignant Neoplasms, Neoplasias, BIM, malignant neoplasm, Expression Signature, Bam-C, Gene Expression Profiles, Whole, BAM, Bam, Transcriptomes, SMC3L1, Co Pilot, Malignancies, Signature, CSPG6, other neoplasm, EGR-3, Neoplasia, Cancer, Tumors"],"additional_accession":[]},"is_claimable":false,"name":"ClinicalPilot RNASEQ - samples","description":"This dataset contains whole genome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot.  Mapping was performed using BWA.  This dataset accompanies the paper \"Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome\"","dates":{"updated":"2024-06-19 20:38:56"},"accession":"EGAD00001004280","cross_references":{"TAXONOMY":["9606"],"EGA":["EGAC00001000044","EGAS00001002217"]}}