<HashMap><database>EGA</database><scores/><additional><omics_type>Genomics</omics_type><dataset_type>N/A</dataset_type><full_dataset_link>https://ega-archive.org/datasets/EGAD00001004490</full_dataset_link><sample_count>11</sample_count><description>EGA dataset EGAD00001004490</description><repository>EGA</repository><title>Recalibrated whole-exome sequencing alignment data of papillary thyroid cancer of Saudi Arabia</title><name_synonyms>Vasp, VASP, DmelCG15112, ENHANCER OF ATNSI ACTIVITY, Data Set, MENA, NDPP1, l(2)02029, Enb, enb, ENA, Ena, CG15112, 2018., ENA/VASP</name_synonyms><description_synonyms>DNS, (Deoxyribonucleotide)n, Complete Exome, Neoplasms, Benign Neoplasm, papillary thyroid cancer, papillary thyroid gland carcinoma, Tumor, Malignant, Deoxyribonucleic acids, Nonmedullary Thyroid Carcinoma, Deoxyribonucleic Acid, Whole Transcriptome, Transcriptome Sequencing, papillary thyroid carcinoma, Nonmedullary Thyroid Carcinomas, average, WES, thymus nucleic acid, Complete, Exome Sequencings, Malignancy, Genomes, Papillary Thyroid Carcinomas, Complete Exome Sequencing, Whole Transcriptome Sequencing, Tissue, Double Stranded, Deoxyribonucleic acid, papillary cancer of thyroid, Sequencing, papillary carcinoma of the thyroid, Papillary Thyroid Carcinoma, Neoplasias, Whole Exome, Thyroid Carcinomas, Papillary Thyroid Cancer, malignant neoplasm, Clients, Whole, Double-Stranded DNA, Malignancies, (Deoxyribonucleotide)m, deoxyribonucleic acids, DNAn, papillary cancer of the thyroid, Papillary Thyroid, Cancer, Tumors, Data Set., Carcinoma, Malignant Neoplasm, Complete Exome Sequencings, Data Set, whole blood, Papillary Thyroid Cancers, DNAn+1, Exome, thyroid papillary carcinoma, Double-Stranded, Thyroid Carcinoma, Papillary Carcinoma Of Thyroid, Client, (Deoxyribonucleotide)n+m, Exome Sequencing, MT, Benign, Neoplasm, papillary carcinoma of the thyroid gland, simple tissue, thyroid gland papillary carcinoma, ds-DNA, desoxyribose nucleic acid, PTC, Carcinomas, papillary carcinoma of thyroid gland, Complete Transcriptome, primary cancer, Complete Transcriptome Sequencing, Benign Neoplasms, Cancers, whole genome, malignant tumor, Nonmedullary, Malignant Neoplasms, Thyroid Cancers, Papillary, papillary carcinoma of thyroid, Nonmedullary Thyroid, Patient, Familial Nonmedullary Thyroid Cancer, papillary cancer of the thyroid gland, ds DNA, Whole Exome Sequencing, Desoxyribonukleinsaeure, DNA, papillary cancer of thyroid gland, Transcriptome Sequencings, Neoplasia, thyroid gland papillary cancer</description_synonyms></additional><is_claimable>false</is_claimable><name>ena-DATASET-KFSHRC-02-12-2018-08:49:16:382-14 - samples</name><description>The dataset consists of samples from papillary thyroid cancer patients. A total of 11 DNA samples from blood/normal and cancer tissue are subjected to whole
exome sequencing using Illumina. The fastq files generated were aligned with reference genome ‘hg19’, duplicates were marked, realignment around indels and
quality recalibration were performed to produce good quality variants. The recalibrated “.bam” files are included with this dataset.</description><dates><updated>2020-07-16 15:33:08</updated></dates><accession>EGAD00001004490</accession><cross_references><TAXONOMY>9606</TAXONOMY><EGA>EGAC00001000010</EGA><EGA>EGAS00001003357</EGA></cross_references></HashMap>