{"database":"EGA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics"],"dataset_type":["N/A"],"full_dataset_link":["https://ega-archive.org/datasets/EGAD00001004824"],"sample_count":["27"],"description":["EGA dataset EGAD00001004824"],"repository":["EGA"],"title":["Comparison of protocols for deriving pancreatic progenitors from hPSCs (ATAC-seq)"],"description_synonyms":["HITS-CLIP, High Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, ChIP-Chip, Library., BamF, bim, biml, Data Set, Chromatin Immuno-precipitation, BamC, GFP cell, bam, Cross Linking and Immunoprecipitation Followed by Deep Sequencing, ChIP Sequencing, ham, CLIP-Seq, BOD, Assay for Transposase-Accessible Chromatin Using Sequencing, Nkx6a, ChIP-PET, ChIP-Exo, fs(3)neo61, CG10422, method, NKX6A, method used in an experiment, Chromatin Immunoprecipitation Sequencing-Chip, GFP 细胞, bim-beta7, High-Throughput Sequencing of RNA Isolated by Crosslinking Immunoprecipitation, bod, DmelCG10422, bimel, NKX6.1, ChIA-PET, Chromatin Immunoprecipitation Sequencing Chip, Chromatin Immuno precipitation Sequencing, ATAC-seq assay, HCAP, Nkx61, bim-beta6, ChIP, Chromatin Immunoprecipitation Paired End Tag, ATAC-seq, Chromatin Immuno Precipitation Paired End Tag, GFP, Cross-Linking and Immunoprecipitation Followed by Deep Sequencing, Chromatin Immunoprecipitation, Chromatin Immuno-precipitation Sequencing, alpha, ChIP Exonuclease, study protocol, CDLS3, ChIP-Seq, BMH, Sequencing, Assay for Transposase Accessible Chromatin Using Sequencing, plan specification, Chromatin Immunoprecipitation Paired-End Tag, BIM, Bam-C, Nkx6.1, Chromatin Immuno-Precipitation Paired-End Tag, BAM, nkx6.1, Bam, ATAC-Seq, Chromatin Immunoprecipitation Sequencing-Chips, SMC3L1, CSPG6, ChIP-Exonuclease, NICR1047"],"name_synonyms":["Vasp, VASP, Data Set., DmelCG15112, ENHANCER OF ATNSI ACTIVITY, MENA, NDPP1, l(2)02029, Enb, enb, ENA, Ena, CG15112, ENA/VASP"],"additional_accession":[]},"is_claimable":false,"name":"ena-DATASET-WTCHG-06-03-2019-11:21:24:784-222 - samples","description":"This dataset contains 27 mapped bam files. The samples were generated with 3 different protocols for deriving pancreatic progenitors from hPSC. Three parallel differentiations were performed, all done in a hPSC NKX6.1-GFP reporter line. For each protocol there are three cellular populations: total (presort), GFP+ and GFP- .  In summary: 3 differentiations x 3 protocols x 3 cellular populations. We prepared ATAC-seq libraries for the 27 samples, and sequenced them on Illumina HiSeq4000.","dates":{"updated":"2019-11-28 18:10:03"},"accession":"EGAD00001004824","cross_references":{"TAXONOMY":["9606"],"EGA":["EGAC00001000335","EGAS00001003513"]}}