<HashMap><database>EGA</database><scores/><additional><omics_type>Genomics</omics_type><dataset_type>N/A</dataset_type><full_dataset_link>https://ega-archive.org/datasets/EGAD00001006090</full_dataset_link><sample_count>5</sample_count><description>EGA dataset EGAD00001006090</description><repository>EGA</repository><title>AT-AML samples dataset</title><pubmed_title>Genomic profiling of acute myeloid leukaemia associated with ataxia telangiectasia identifies a complex karyotype with wild-type TP53 and mutant KRAS, G3BP1 and IL7R.</pubmed_title><pubmed_authors>Goldgraben Mae A MA, Fewings Eleanor E, Larionov Alexey A, Scarth James J, Redman James J, Telford Nick N, Arkwright Peter D PD, Bonney Denise D, Wilks Deepti D, Kulkarni Samar S, Taylor A Malcolm R AMR, Tischkowitz Marc D MD, Meyer Stefan S</pubmed_authors></additional><is_claimable>false</is_claimable><name>98be40b5-5141-4ceb-8723-6ddc59a9cda6 - samples</name><description>Serial samples from one AT-AML patient as described in publication Goldgraben et al Pediatric Blood &amp; Cancer 2020. 

Whole exome sequencing of a AT-'germline' blood sample, one bone marrow sample (at AML diagnosis) and 3 AML blood samples. Library preped using the Illumina Nextera Rapid Capture Exome Enrichment Kit, and sequenced as PE150 on HiSeq4000.
Provided: 5 BAM files (GRCh37); 2 VCF analyses (germline and somatic)</description><dates><updated>2020-05-18 07:51:38</updated></dates><accession>EGAD00001006090</accession><cross_references><TAXONOMY>9606</TAXONOMY><pubmed>32383811</pubmed><EGA>EGAC00001001565</EGA><EGA>EGAS00001004392</EGA></cross_references></HashMap>