{"database":"EGA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics"],"dataset_type":["N/A"],"full_dataset_link":["https://ega-archive.org/datasets/EGAD00001006393"],"sample_count":["730"],"description":["EGA dataset EGAD00001006393"],"repository":["EGA"],"title":["TS and WGS data"],"additional_accession":[]},"is_claimable":false,"name":"342c2b8d-6385-4e0e-ae36-62f0573b0434 - samples","description":"The dataset contains the targeted sequencing (TS) and the whole genome low pass (WGS) BAM files of the study. \n\nFor the TS:\nSamples: TS_XXX\nThere are normal and tumor DNA samples.\nEach DNA strand has been sequenced independently (PoolA and PoolB).\nA TruSeq Custom Amplicon panel of 20 genes frequently mutated in ILC and/or ER-positive BC in general was designed using DesignStudio from Illumina: AKT1, ARID1A, CDH1, ERBB2, ERBB3, ESR1, FOXA1, GATA3, IGF1R, JAK2, MAP2K4, MAP3K1, NF1, PIK3CA, PTEN, RB1, RUNX1, STAT3, TBX3, and, TP53. \n\nFor the WGS:\nSamples: WGS_XXX\nThere are normal and tumor DNA samples.\nSamples were sequenced to an average target coverage of 0.5X.","dates":{"updated":"2020-09-11 12:26:42"},"accession":"EGAD00001006393","cross_references":{"TAXONOMY":["9606"],"EGA":["EGAC00001001734","EGAS00001004641"]}}