{"database":"EGA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics"],"dataset_type":["N/A"],"full_dataset_link":["https://ega-archive.org/datasets/EGAD00001007655"],"sample_count":["43"],"description":["EGA dataset EGAD00001007655"],"repository":["EGA"],"title":["Capture-based Methods for Transcriptomic Profiling of FFPE material"],"additional_accession":[]},"is_claimable":false,"name":"d0c02785-f55c-4dac-858e-5446ecc5c8fb - samples","description":"This dataset includes all FASTQ files for 11 samples where different capture-based methods for transcriptome profiling have been tested. Specifically, we have the 'traditional' RNA-seq experiment with fresh frozen (FF) material, and 3 different capture methods for the matching formalin-fixed paraffin-embedded samples: Agilent (AGI), IDT, and Twist Biosciences (TBS). \nIn total, there are 43 samples with paired-end FASTQ files (1 sample did not have sufficient material to test all methods). \nSamples are identified by the R01-R11 IDs with a suffix that indicates the capture method used (or FF for fresh frozen).","dates":{"updated":"2021-09-02 12:11:42"},"accession":"EGAD00001007655","cross_references":{"TAXONOMY":["9606"],"EGA":["EGAC00001002098","EGAS00001005255"]}}