EGAGenomicsN/Ahttps://ega-archive.org/datasets/EGAD0000100969010EGA dataset EGAD00001009690EGAReference alignment files (BAM) and gene count files of 10 tumor samples from nanopore sequencingfalse27417761-ea23-4652-90ce-de8eae4cd909 - samplesReads were aligned to 1000 Genomes assembly reference (hs37d5) using minimap2 2.22. SAM-to-BAM conversion, BAM sorting and indexing were performed with SAMtools 1.13. Read summarization was performed with featureCounts (from Subread 2.0.3) over exon features based on GENCODE Version 19 gene models. Strand specific counting was used.2022-12-02 15:12:10EGAD000010096909606EGAC00001000452EGAS00001006317