{"database":"EGA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics"],"dataset_type":["N/A"],"full_dataset_link":["https://ega-archive.org/datasets/EGAD00001011111"],"sample_count":["29"],"description":["EGA dataset EGAD00001011111"],"repository":["EGA"],"title":["Wilm's tumor sequencing data"],"additional_accession":[]},"is_claimable":false,"name":"e53bdae9-f9f4-4b8f-a003-669696181894 - samples","description":"No. of samples: 80 (28 ULP-WGS, 26 WES, 26 RNA-SEQ)\nFile types: FASTQ (28 ULP-WGS, 19 WES, 18 RNA) and BAM (7 WES, 8 RNA)\nTechnology used: Sequencing - Illumina Novoseq 6000; Map/Align - Illumina DRAGEN v3.7.5; Genome assembly - GrCh38p13\n\nFilename nomenclature: \n- SampleName_Passage_SampleType_TissueType_SequencingType\n- Passage of: PX = unknown; PZ = from patient; P0 = first passage from patient on plastic; P1 = first passage from plastic/PDX/organoid\n- SampleType: STN = normal; STT = tumor\n- SampleType STN: 00 = tissue unknown; 01 = adjacent normal; 02 = fibroblast; 03 = germline blood; 21 = cell line from patient tissue; 22 = cell line from PDX; 23 = cell line from patient fibroblast\n- SampleType STT: 00 = tissue unknown; 01 = primary tumor; 21 = cell line from patient; 22 = cell line from PDX\n- TissueType: WT = Wilm's tumor; 00 = kidney unknown; 01 = kidney left; 02 = kidney right\n- SequencingType: 00 = unknown; 02 = ultra-low pass whole-genome sequencing; 20 = whole-exome; 61 = bulk RNA-sequencing","dates":{"updated":"2023-07-19 16:40:02"},"accession":"EGAD00001011111","cross_references":{"TAXONOMY":["9606"],"EGA":["EGAC00001003325","EGAS00001007389"]}}