{"database":"EGA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics"],"dataset_type":["N/A"],"full_dataset_link":["https://ega-archive.org/datasets/EGAD00001011157"],"sample_count":["9"],"description":["EGA dataset EGAD00001011157"],"repository":["EGA"],"title":["Whole exome sequencing of SarBC-01- and UroBC-01-related samples."],"additional_accession":[]},"is_claimable":false,"name":"1cff0e12-c85e-4f2a-9f71-10d8885dd085 - samples","description":"This dataset contains raw FASTQ files from DNA of SarBC-01-related samples (SarBC-01 patient Germline, SarBC-01 patient Urothelial tumor, SarBC-01 patient Sarcomatoid tumor, SarBC-01 Passage 6 organoids, SarBC-01 Passage 20 organoids) and UroBC-01 related samples (UroBC-01 patient Germline, UroBC-01 patient Urothelial tumor, UroBC-01 Passage 19 organoids, UroBC-01 Passage 6 organoids). DNA was extracted from FFPE tissue, using RecoverAll RNA/DNA extraction kit (Invitrogen, Carlsbad, CA, USA, AM1975) followed by incubation with Uracil-DNA Glycosylase, and fresh or flash frozen tissue, using Quick-DNA/RNA Miniprep kit (Zymo Research, Irvine, CA, USA, D7001).  Twist Human Core Exome + RefSeq + Mito-Panel kit (Twist Bioscience, 102031) was used for the whole exome capturing. Sequencing was performed on Illumina NovaSeq 6000 using paired-end 100-bp reads.","dates":{"updated":"2024-02-28 11:23:10"},"accession":"EGAD00001011157","cross_references":{"TAXONOMY":["9606"],"EGA":["EGAC00001002981","EGAS00001007430"]}}