{"database":"EGA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics"],"dataset_type":["N/A"],"full_dataset_link":["https://ega-archive.org/datasets/EGAD00001011363"],"sample_count":["80"],"description":["EGA dataset EGAD00001011363"],"repository":["EGA"],"title":["Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients"],"additional_accession":[]},"is_claimable":false,"name":"83859d7e-2be4-45af-8f43-d8be586e0945 - samples","description":"We generated a dataset consisting of 79 VCF files, and respective FASTQ and CRAM files, methodically generated using the GLIMPSE1 imputation algorithm leveraging the 1000 Genomes Project Phase 3 dataset as the reference panel of haplotypes. In total this dataset is composed of approximately 325 GB of FASTQ data, 156 GB of CRAM data, and 6 GB of VCF data. Our samples were specifically derived from sequenced DNA from a highly selective cohort of patients, mostly comprised of Iberian Populations in Spain (IBS) individuals but also containing some individuals with other genetic backgrounds, who presented severe COVID-19 symptoms during the initial wave of the SARS-CoV-2 pandemic in Madrid, Spain. On average, each VCF file in this rich dataset contains 9.49 million high-confidence single nucleotide variants [95%CI: 9.37 million - 9.61 million].","dates":{"updated":"2023-10-18 15:24:38"},"accession":"EGAD00001011363","cross_references":{"TAXONOMY":["9606"],"EGA":["EGAC00001003435","EGAS00001007573"]}}