{"database":"EGA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics"],"dataset_type":["N/A"],"full_dataset_link":["https://ega-archive.org/datasets/EGAD00001011998"],"sample_count":["82"],"description":["EGA dataset EGAD00001011998"],"repository":["EGA"],"title":["CCA RNA-seq data (60 CCA, 6 normal, 16 cell-line)"],"additional_accession":[]},"is_claimable":false,"name":"80ae029f-6864-41c3-87d6-12e7ddcc4207 - samples","description":"Fastq files for RNA-seq for 60 CCAs, 6 normal bile duct tissues, 14 CCA cell-lines (including replicates), and 2 normal cholangiocyte cell-lines (including replicates). RNA was extracted using the Qiagen RNeasy Mini kit. Illumina Tru-Seq Stranded Total RNA kit (Illumina, San Diego, California, USA) was used to prepare RNA libraries from 1 µg of total RNA. Paired-end 150 bp sequencing was performed using Illumina HiSeq4000 sequencer with the paired-end 150 bp read option.","dates":{"updated":"2023-11-28 16:37:30"},"accession":"EGAD00001011998","cross_references":{"TAXONOMY":["9606"],"EGA":["EGAC00001003452","EGAS00001007309"]}}