<HashMap><database>EGA</database><scores/><additional><omics_type>Genomics</omics_type><dataset_type>N/A</dataset_type><full_dataset_link>https://ega-archive.org/datasets/EGAD00001011998</full_dataset_link><sample_count>82</sample_count><description>EGA dataset EGAD00001011998</description><repository>EGA</repository><title>CCA RNA-seq data (60 CCA, 6 normal, 16 cell-line)</title></additional><is_claimable>false</is_claimable><name>80ae029f-6864-41c3-87d6-12e7ddcc4207 - samples</name><description>Fastq files for RNA-seq for 60 CCAs, 6 normal bile duct tissues, 14 CCA cell-lines (including replicates), and 2 normal cholangiocyte cell-lines (including replicates). RNA was extracted using the Qiagen RNeasy Mini kit. Illumina Tru-Seq Stranded Total RNA kit (Illumina, San Diego, California, USA) was used to prepare RNA libraries from 1 Ã‚Âµg of total RNA. Paired-end 150Ã¢Â€Â‰bp sequencing was performed using Illumina HiSeq4000 sequencer with the paired-end 150Ã¢Â€Â‰bp read option.</description><dates><updated>2023-11-28 16:37:30</updated></dates><accession>EGAD00001011998</accession><cross_references><TAXONOMY>9606</TAXONOMY><EGA>EGAC00001003452</EGA><EGA>EGAS00001007309</EGA></cross_references></HashMap>