EGAGenomicsCancer Genomicshttps://ega-archive.org/studies/EGAS00001005499EGAEGA study EGAS00001005499CRUK Accelerator: Non-small cell lung cancer whole exome and RNA sequencingEGArestrictednon-small cell lung cancer, Carcinomas, non-small cell cancer of the lung, non-small cell carcinoma of lung, Lung Carcinomas, Carcinoma, NSCLC, non-small cell lung carcinoma, Nonsmall Cell Lung Cancer, Non-Small-Cell Lung Carcinoma, Non-Small Cell Lung Cancer, NSCLC - non-small cell lung cancer, Non-Small Cell Lung, Non-Small-Cell Lung, Non-small cell lung cancer, Non-Small Cell Lung Carcinoma, non-small cell cancer of lung, non-small cell carcinoma of the lung, Non Small Cell Lung., Non-Small-Cell Lung Carcinomas, non-small cell lung carcinoma (disease), Non Small Cell Lung Carcinoma, Lung Carcinoma, Non-Small-CellAdenocarcinoma, Bru, Ribonucleic, dalpha-SNAP, DNS, dalphaSNAP, Raw, (Deoxyribonucleotide)n, Complete Exome, Adenomas, non-small cell lung carcinoma, SEC9, Blood, Oxyphilic Adenocarcinoma, Non-Small Cell Lung Cancer, Non-Small-Cell Lung, malignant squamous cell tumor, non-small cell carcinoma of the lung, Squamous Cell Carcinoma, bA416N4.2, Malignant, ADNOS, Deoxyribonucleic acids, Granular Cell Adenocarcinomas, squamous cell cancer, Planocellular Carcinomas, non-small cell cancer of the lung, Lung Carcinomas, Epidermoid Carcinomas, Deoxyribonucleic Acid, l(3)77ABa, PBMC, "adenocarcinoma" EXACT [NCI2004_11_17:C2852], Granular Cell Adenocarcinoma, peripheral blood mononuclear cell., Non-Small-Cell Lung Carcinoma, Gene Products, CG6625, no subtype (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:35917007], Tubular Carcinoma, l(3)77ABc, Whole Transcriptome, Transcriptome Sequencing, NSCLC - non-small cell lung cancer, Del(8)44H, Basal Cell Adenocarcinomas, RIC-4, Non-Small Cell Lung Carcinoma, Non Polyadenylated, dJ1068F16.2, squamous carcinoma, alpha-SNAP, Cribriform Carcinoma, epidermoid cell cancer, RNA Gene Products, Svc, squamous cell epithelioma, malignant epidermoid cell tumour, WES, thymus nucleic acid, Complete, Exome Sequencings, malignant epidermoid cell neoplasm, malignant squamous cell neoplasm, Adenoma, Granular Cell Carcinoma, Complete Exome Sequencing, N, Whole Transcriptome Sequencing, Tubular Adenocarcinoma, squamous cell carcinoma (morphologic abnormality), Tissue, Double Stranded, Non-Small Cell Lung, squamous cell, Deoxyribonucleic acid, Tubular Carcinomas, Cribriform Carcinomas, Non Small Cell Lung Carcinoma, Lung Carcinoma, Sequencing, SNAP-25, Non-Polyadenylated RNA, NSCLC, Whole Exome, Granular Cell Carcinomas, Clients, Whole, Nonsmall Cell Lung Cancer, Double-Stranded DNA, liquid, carcinoma, (Deoxyribonucleotide)m, deoxyribonucleic acids, DNAn, Non-Small-Cell Lung Carcinomas, Carcinoma, Oxyphilic, RNA, DmelCG6625, dSNAP, Complete Exome Sequencings, whole blood, ribose nucleic acid, Basal Cell, PBMC cell, malignant, DNAn+1, Exome, ribonucleic acids, Planocellular, RNS, Squamous, Double-Stranded, dsnap, Adenocarcinomas, malignant epidermoid cell tumor, Client, non-small cell lung cancer, (Deoxyribonucleotide)n+m, Exome Sequencing, "adenocarcinoma, Tubular, Stickstoff, Malignant Adenoma, yeast nucleic acid, Ribonukleinsaeure, epidermoid carcinoma, pentosenucleic acids, Granular Cell, Ribonucleic acids, simple tissue, Oxyphilic Adenocarcinomas, Squamous Cell Carcinomas, Non-small cell lung cancer, ds-DNA, desoxyribose nucleic acid, non-small cell lung carcinoma (disease), Basal Cell Adenocarcinoma, Carcinomas, Squamous Carcinoma, ribonucleic acid, Acid, Complete Transcriptome, Squamous Cell, Planocellular Carcinoma, Complete Transcriptome Sequencing, Col4a-1, Peripheral Blood, PBM cell, Epidermoid, Non Polyadenylated RNA, "adenocarcinoma" EXACT [CSP2005:2000-0386], Non-Polyadenylated, Cribriform, malignant squamous cell tumour, alphaSnap, Ribonucleic Acid, azote, squamous cell Epithelioma, "adenocarcinomas" EXACT [SNOMEDCT_2005_07_31:189578007], Tubular Adenocarcinomas, Malignant Adenomas, Non Small Cell Lung, nitrogeno, Reticuloendothelial System, non-small cell carcinoma of lung, nitrogen, Patient, squamous cell carcinoma NOS (morphologic abnormality), SNAP, PBMCs, ds DNA, RIC4, Whole Exome Sequencing, Squamous Carcinomas, Desoxyribonukleinsaeure, SCC, "adenocarcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189582009], DNA, non-small cell cancer of lung, 7N, Epidermoid Carcinoma, other neoplasm, Transcriptome Sequencings, Non-Small-Cell, squamous cell carcinoma, snapfalseNon-small cell lung cancer sequencingFor neoantigen discovery in non-small cell lung cancer, whole exome sequencing and RNAseq was performed on 15 adenocarcinoma and 9 squamous cell carcinoma patients. The raw sequencing data is deposited here. DNA and RNA were extracted from tumour tissue that had been obtained fresh and immediately snap frozen in liquid nitrogen. Germline DNA and RNA were extracted from autologous PBMC.2021-08-09 10:03:59EGAS000010054999606EGAD00001007934EGAC00001002242