{"database":"EGA","file_versions":[],"scores":null,"additional":{"omics_type":["Genomics"],"study_type":["RNASeq"],"full_dataset_link":["https://ega-archive.org/studies/EGAS00001006537"],"host":["EGA"],"description":["EGA study EGAS00001006537"],"dataset_title":["Single nuclei RNA-Seq from 5 regions of the human fetal brain"],"repository":["EGA"],"category":["restricted"],"name_synonyms":["nuclei, Human, the brain, nucleus atomi, suprasegmental structures, noyau atomique, human being, Man (Taxonomy), nucleus, Homo sapiens, Modern Man, nucleo, noyau, Modern, synganglion, Kern, nucleo atomico, suprasegmental levels of nervous system, Man, Atomkern, encephalon, human, Encephalon."],"description_synonyms":["thalamus opticus, Bru, corpus cerebelli, Raw, Ammon horn fields, epencephalon-1, NK/GPI., ethical approval, Atomkern, Lobus Frontalis, dmTAF[[II]]230, Formations, cromo, Biological, Frontal region, synganglion, Frontal, Gpi-1, Svc, nucleus atomi, Frontal Cortex, 24Cr, Man (Taxonomy), TFIID TAF250, single nuclei RNA sequencing, Biology, cel, Nlk, Tissue, SVZ, analyzer, suprasegmental levels of nervous system, Frontal Cortices, Ammons Horn, Brodmann Area 8, Parencephalon, infratentorial region, Ammons horn, sample, Reagents, embryonic GE, Brodmann's, ammon gyrus, Gpi, dTAF[[II]]230, suprasegmental structures, Ammon, formatio hippocampi, Modern, Cr, TAF200, Ammon Horn, hippocampus proper, 10x sequencing, TAFII-250, TAF250/230, Frontal Eye Fields, female, not genetically inherited, Cerebella, seahorse, Subiculums, chrome, TAFII250, mOC-X, Hippocampal, major hippocampus, Ammon's Horn, simple tissue, median, NK|GPI, Subiculum, Developmental, Ammon's, Org, ORG, Ammon's horn, Parencephalons, Chrom, Brodmanns Area 8, Control, frontal neocortex, Gpi1-r, Gpi1-s, Quality, Controls, Supplementary, CG17603, Gpi1-t, TAF[[II]], human, GE, Area 8, parencephalon, primal cortex, Cerebellums, Supplementary Eye Fields, Taf250, thalami, SR3-5, Indicator, Auxology, Bglap-rs1, TAF230, Gpi1s, the brain, Lobe, Ventricular, d230, human being, noyau atomique, AI461847, Reagent, ammon horn, Kern, dTAFII250, Eminence, EfW1, DOI, Human, Ganglionic Eminences, Homo sapiens, dmTAF1, Taf230, Brodmann's Area 8, Pgi, Del(8)44H, nucleo atomico, Cornu Ammonis, Man, Reagents and Indicators, Biologic Psychiatry, Hippocampus, MRC, TAF250, doi, nuclei, Taf200, dTAF[[II]]250, cell, Gpi-1r, Gpi-1s, Ventricular Eminence, nucleo, noyau, Phi, frontal cortex, Gpi-1t, Frontal Eye Field, Taf1p, Eye Field, hippocampus major, embryonic SVZ, Indicators, snRNA-seq, NovaSeq 6000, dTAF250, Quality Controls, Thalamencephalon, nucleus, OX-2, TAF, 10X sequencing, Supplementary Eye Field, Psychiatry, Biologic, Horn, Cornu ammonis, TAF[[II]]250, female human body, Proper, Hippocampus Propers, thalamencephalon, l(3)84Ab, Hippocampal Formation, BG:DS00004.13, MF, Amf, encephalon, Cell, dTAF230, subventricular zone, read, archipallium, Cortex, Brodmann, p230, TAF[[II]]250/230, TFIID, Evolutionary Developmental Biology, Library, Hippocampus Proper, NK, Taf[[II]]250, cornu ammonis, hippocampus proprius, TAF[[II]]230, Col4a-1, Propers, Corpus Cerebelli, CNS - Brain - Hippocampus (MMHCC), TAF[II]250, MOX2, sample population, Ganglionic, dorsal thalamus, MOX1, chromium, Eye Fields, hippocampus, thalamus dorsalis, sNuc-seq, DmelCG17603, Ventricular Eminences, Modern Man, Thalamencephalons, Chromium, Frontal Lobes, Hippocampal Formations, Females, Formation, TAF1"],"additional_accession":[]},"is_claimable":false,"name":"single nuclei RNASeq of 5 regions of the human prenatal brain","description":"Data generated through single nuclei RNA sequencing on 5 regions of the brain (frontal cortex, ganglionic eminence, hippocampus, thalamus and cerebellum) from 3 fetuses (two of 14 and one of 15 post-conception weeks, all female). Tissue was acquired from the MRC-Wellcome Trust Human Developmental Biology Resource (HDBR) with ethical approval.  \n\nsnRNA-seq libraries were prepared from ∼10,000 nuclei from each sample using Chromium Single Cell 3ʹ (v3) reagents (10X Genomics). Quality control of libraries was performed using the Agilent 5200 Fragment Analyzer before sequencing on an Illumina NovaSeq 6000 to a depth of at least 865 million (median = 1.01 billion) read pairs per library. Raw sequencing data were converted into FASTQ files.\n\nFor a full description of data generation, please see Cameron et al, Biological Psychiatry 2022, https://doi.org/10.1016/j.biopsych.2022.06.033.","dates":{"updated":"2022-09-01 16:58:05"},"accession":"EGAS00001006537","cross_references":{"TAXONOMY":["9606"],"EGA":["EGAD00001009303","EGAC00001002831"]}}