{"database":"EVA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Vcf":["ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB35532/Soybean.112_wild_samples.MAF1.vcf.gz.tbi","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB35532/Soybean.133_culti_samples.MAF1.vcf.gz","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB35532/Soybean.112_wild_samples.MAF1.accessioned.vcf.gz","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB35532/Soybean.133_culti_samples.MAF1.vcf.gz.tbi","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB35532/Soybean.133_culti_samples.MAF1.accessioned.vcf.gz","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB35532/Soybean.112_wild_samples.MAF1.vcf.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":{"citationCount":0,"reanalysisCount":0,"viewCount":0,"searchCount":0},"additional":{"dataset_type":["Whole Genome Sequencing"],"omics_type":["Genomics"],"submitter":["KRIBB"],"instrument_platform":["-"],"species":["Glycine Max"],"full_dataset_link":["https://www.ebi.ac.uk/eva/?eva-study=PRJEB35532"],"repository":["EVA"],"name_synonyms":["strain, CG11478, Dmel_CG6393, DmelCG42257, cg11478, 65K, CG6393, CG42257, Dmel_CG30327, snp, cultivar, whole genome, CG30327, Glycine max subsp. soja, ecotype, wild soybean, Genomes."],"description_synonyms":["Soybeans, soybeans., cg11478, NOR1, Nor1, anatomical protrusion, CHN, False, selection process, frequency, CSMF, CG30327, wild soybean, protrusion, Soy Bean, CG11478, CG6393, Glycine max subsp. soja, outbreaks, Dmel_CG6393, DmelCG42257, F, AI573420, MINOR, Soybean, Phaseolus max, occurrence, Bean, soybeans, Soy Beans, prevalence, surveillance, morbidity, endemics, soybean, cv. Wye, NOR-1, spine, 65K, Glycine max, CG42257, Dmel_CG30327, Beans, epidemics, TEC, snp, Minor, Soy, incidence"],"citation_count":["0"],"additional_accession":[]},"is_claimable":false,"name":"Bi-allelic SNP markers of 133 cultivar and 112 wild soybean samples through whole-genome sequencing","description":"This project was conducted to investigate selection signatures in soybean subgroups. 112 Glycine soja and 133 Glycine max accessions were re-sequenced, and numerous variants for the 245 accessions were obtained through variant calling process using GATK. Then, to avoid as false-positive variants as much possible, variant-quality-filtering and allele-frequency-filtering processes were conducted to the obtained variants. Finally, 9,650,073 bi-allelic SNP variants with minor allele frequency > 1% were identified for the 245 soybean accessions and utilized to this project.","dates":{"publication":"2019-11-26"},"accession":"PRJEB35532","cross_references":{"TAXONOMY":["3847"]}}