{"database":"EVA","file_versions":[{"headers":{"Content-Type":["application/json"]},"body":{"files":{"Vcf":["ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB36125/wheat.90K.SNP_data.for.GWAS.population.20200108.accessioned.vcf.gz.tbi","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB36125/wheat.90K.SNP_data.for.GWAS.population.20200108.vcf.gz","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB36125/wheat.90K.SNP_data.for.GWAS.population.20200108.accessioned.vcf.gz.csi","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB36125/wheat.90K.SNP_data.for.GWAS.population.20200108.vcf.gz.tbi","ftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB36125/wheat.90K.SNP_data.for.GWAS.population.20200108.accessioned.vcf.gz"]},"type":"primary"},"statusCode":"OK","statusCodeValue":200}],"scores":{"citationCount":0,"reanalysisCount":0,"viewCount":0,"searchCount":0},"additional":{"dataset_type":["Genotyping By Array"],"omics_type":["Genomics"],"submitter":["Food Crops Institute,Hubei Academy of Agricultural Sciences"],"instrument_platform":["-"],"species":["Triticum Aestivum"],"full_dataset_link":["https://www.ebi.ac.uk/eva/?eva-study=PRJEB36125"],"repository":["EVA"],"name_synonyms":["study, Rectifusarium, wide/broad, Bisifusarium, Genomes, determination, cephalic area, Fusarium sect. Setofusarium, chemical analysis., Heads, whole genome, Setofusarium, Albonectria, broad, Gibberella, Haematonectria, wide, Associations, Fusariums, Neocosmospora, head (volume), Luteonectria, Cyanonectria, assay, Nothofusarium, adult head, Geejayessia"],"description_synonyms":["host organism, Materials, artificial sequence, insensitive, methionine aminopeptidase activity, determination, Pflanze, AI452176, Albonectria, Foundation, prevention, viridiplantae, School-Age, Techniques, Readability, Tier, diseases, Method, 2510001K09Rik, Associations, 2, diseases and disorders, animal, prevention and control, AI159733, Sinkiang, Wheat, peptidase M activity, Animalia, adenomas, Rectifusarium, rabGAPLP, human disease, L-methionine aminopeptidase activity, Triticum durum subsp. durum, Man (Taxonomy), reference sample, Infant, Genomes, Nursery, developmental field, RabGAP-5, Heads, wheat, Gibberella, Tricum aestivum, common wheat, genetic, preventive measures, Methodological Studies, RUSC3, flr, head (volume), Durum Wheat, 6330400D04, Triticum turgidum, TRAPA, Homo sapiens disease, Haploid, Haploidies, SIMPLE, common wheat., preventive therapy, wide/broad, Bisifusarium, Triticum vulgare, animalia, Modern, Infant Nursery, MYH-associated polyposis, familial, autosomal recessive familial adenomatous polyposis, Maps, Triticum turgidum subsp. durum, future organ, Procedure, Triticum durum ssp. durum, results, Manchuria, organism, School Age, PIG7, Diseases, Genetic Materials, materials, region, Genetic Material, Geejayessia, autosomal recessive, RUTBC3, Populations, Mainland China, whole organism, durum wheat, resistant, Triticum sativum, Plant, INSDC_feature:gene, Methodological, whole genome, GBS, Methodological Study, Haploid Cell, human, RABGAP5, Gbeta5, disease, SYNTHETIC CONSTRUCT sequences, wide, Nurseries, Material, Koerper, multiple colorectal, Cells, artificial, Cyanonectria, Cistron, inherited genetic, School-Age Population, Triticum aestivum, other disease, human being, multi-cellular organism, Procedures, Gene, broad, Triticum aestivum subsp. aestivum, Human, post-infective polyneuritis, Haematonectria, method, organ field, Homo sapiens, method used in an experiment, resistance, Studies, Luteonectria, disease or disorder, field, Nothofusarium, Animal, synthetic genetic interaction (sensu inequality), Man, Technique, familial adenomatous polyposis, MAP, plantae, School-Age Populations, study, doubled, Triticum rigidum ssp. durum, Genetic, duri wheat, Triticum spelta, Triticum aestivum8, familial adenomatous polyposis 2, cephalic area, Fusarium sect. Setofusarium, Triticum aestivam, synthetic genetic interaction defined by inequality, Sciences, metazoa, Population, non-neoplastic, autosomal recessive multiple colorectal adenomas, Study, bread wheat, Neocosmospora, disorder, site, School Age Population, constitutitional genetic, Controlled, TP53I7, Triticum rigidum var. durum, Haploid Cells, Triticum durum, Controlling, MUTYH-Associated Polyposis, body, Breads, disorders, whole body, artificial gene, medical condition, synthetic DNA, grain, Cistrons, People's Republic of China, Cell, Inner Mongolia, Canadian hard winter wheat, Metazoa, chemical analysis, sequence, synthetic, condition, post-infectious polyneuritis, Durum, prophylaxis, Triticum rigidum conv. durum, Setofusarium, Understanding, MYH-Associated Polyposis, synthetic constructs, Infant Nurseries, School Age Populations, primary structure of sequence macromolecule, plan specification, Durum Wheats, control, Haploids, Fusariums, Modern Man, postinfectious polyneuritis, MAP syndrome, SSR, assay, adult head, hereditary, FAP2, colorectal adenomatous polyposis"],"citation_count":["0"],"additional_accession":[]},"is_claimable":false,"name":"Mapping resistance to Fusarium head blight by genome wide association study and linkage analysis","description":"This project was supported by China Nutrual Science Foundation(2013-2016). Fusarium head blight (FHB) is a devastating fungal disease of bread and durum wheat worldwide. This disease reduces wheat yield, lowers processing qualities, and makes grain not suitable for human and animal consumption. More recently, FHB has been expanding northwards to the Yellow River - Huaihe River Region. The increasing threat of this disease has created more incentive for plant geneticists and breeders to map the resistances and develop varieties that are resistant to this disease. Application of host resistance is an economically and environmentally friendly control method of FHB. In order to map gene loci underlying FHB resistance, a natural population containing 240 bread wheat varieties/lines and a doubled haploid (DH) population (169 lines) were constructed. The natural population consists of 10 FHB resistant checks, 120 varieties/lines from the Yangtze River Region and 40 varieties/lines from Yellow River ? Huaihe River Region, 15 synthetic hexaploid wheat lines, 25 synthetic-derivatives and 30 CIMMYT elite lines. The DH population was produced from a FHB resistant synthetic-derived bread wheat line. These materials were planned to be genotyped by genotyping by sequencing (GBS) and simple-sequence repeat (SSR) markers, and to be phenotyped in artificially inoculated field nurseries in different environments. Genome wide association study and linkage analysis will be conducted using the genotypic and phenotypic data of the two populations. The results of genome wide association mapping will be verified by the result of linkage analysis on the DH populatio n. This project should contribute to understanding the genetic basis and diversity for FHB resistance currently present in synthetic hexaploid wheat and comercial bread wheat varieties.","dates":{"publication":"2020-01-13"},"accession":"PRJEB36125","cross_references":{"TAXONOMY":["4565"]}}