EVAapplication/xmlftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB36778/dataset_S1.snp.VCF.vcf.gzftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB36778/dataset_S1.snp.VCF.accessioned.vcf.gzftp://ftp.ebi.ac.uk/pub/databases/eva/PRJEB36778/dataset_S1.snp.VCF.vcf.gz.tbiprimary200OK0000Genotyping By SequencingGenomicsCollege of Forestry, Sichuan Agricultural UniversityIllumina HiSeq 4000Juglans Regiahttps://www.ebi.ac.uk/eva/?eva-study=PRJEB36778EVAGenetic Variations, symmetric dyschromatosis of the extremities, cg11478, CG42628, Variations, DNS, CG5692, conformation, determination, (Deoxyribonucleotide)n, DNAn+1, rapsyn, rad, Diversities, Double-Stranded, CG15720, DSH, CG30327, People's Republic of China, DmelCG5692, Deoxyribonucleic acids, (Deoxyribonucleotide)n+m, Manchuria, CG11478, School-Age, Inner Mongolia, Deoxyribonucleic Acid, DmelCG42628, School Age, CG6393, chemical analysis, Sinkiang., Genetic Diversities, Raps, ds-DNA, desoxyribose nucleic acid, Pins, School-Age Populations, Dmel_CG6393, DmelCG42257, Populations, thymus nucleic acid, rsh, Diversity, Genetic, Mainland China, pins, ribosome-associated degradation, familial reticulate acropigmentation of Dohi, dyschromatosis symmetrica hereditaria 1, Dmel_CG15720, Double Stranded, Deoxyribonucleic acid, Genetic Diversity, Population, PINS, School Age Populations, REM3, 65K, ds DNA, CG42257, Dmel_CG30327, Desoxyribonukleinsaeure, CG4346, snp, Double-Stranded DNA, RAD, Rad, School-Age Population, assay, (Deoxyribonucleotide)m, DNA, deoxyribonucleic acids, School Age Population, associated, DNAn, RAD1, Variation, Dmel_CG4346Genetic Variations, cg11478, adequate, Variations, conformation, Sequence Determination, number, Diversities, aligned to, CG30327, aligned, Determinations, Dmel_CG30327., CG11478, School-Age, School Age, DNA Sequencing, CG6393, DNA Sequence Determinations, Genetic Diversities, sequence, DNA Sequence, Analysis, DNA sequencing, average, School-Age Populations, Populations, Dmel_CG6393, DmelCG42257, Diversity, Genetic, Analyses, Genomes, Determination, whole genome, Genetic Diversity, Population, Sequence Determinations, School Age Populations, Sequencing, primary structure of sequence macromolecule, DNA Sequence Determination, DNA Sequence Analysis, DNA Sequence Analyses, 65K, cardinality, CG42257, snp, School-Age Population, DNA, associated, School Age Population, Variation, Sequence Analyses0falseSNP discovery for genetic diversity and population structure analysis coupled with restriction-associated DNA (RAD) sequencing in walnut cultivars of Sichuan Province, ChinaIn this project, restriction-associated DNA sequencing was conducted to investigate the genetic variation and population structure among 41 walnut cultivars, and `Chandler? (J. regia) was used as the reference sequence. As a result, the average percentage of sequence reads that mapped to the reference genome was 88.51%, and 7 360 659 putative SNPs were obtained. The number of clean reads for each individual drastically varied between 7 018 308 and 22 424 696. After applying successive filters, 160 309 (2.18%) SNPs were deemed adequate. The 160 309 SNPs were aligned against the genome of J. regia `Chandler?. All of the SNPs were mapped across 4 743 of the 105 811 contigs in `Chandler?. The highest representation was obtained for LIHL01055144 (1116 SNPs), and 629 contigs were detected with only 1 SNP.2020-08-14PRJEB3677851240